Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17050

Experiment: pectate 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17055 and HMPREF1058_RS17050 overlap by 4 nucleotidesHMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotidesHMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976 _RS17055 HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923 _RS17050 HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782 _RS17045 HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512 _RS17040 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.977 kb on - strandat 528.981 kb on - strandat 528.992 kb on + strandat 529.027 kb on - strandat 529.194 kb on + strand, within HMPREF1058_RS17055at 529.263 kb on + strand, within HMPREF1058_RS17055at 529.263 kb on + strand, within HMPREF1058_RS17055at 529.313 kb on + strand, within HMPREF1058_RS17055at 529.314 kb on - strandat 529.322 kb on + strand, within HMPREF1058_RS17055at 529.483 kb on - strand, within HMPREF1058_RS17055at 529.514 kb on + strand, within HMPREF1058_RS17055at 529.514 kb on + strand, within HMPREF1058_RS17055at 529.514 kb on + strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.515 kb on - strand, within HMPREF1058_RS17055at 529.530 kb on - strand, within HMPREF1058_RS17055at 529.552 kb on + strand, within HMPREF1058_RS17055at 529.610 kb on - strand, within HMPREF1058_RS17055at 529.648 kb on + strand, within HMPREF1058_RS17055at 529.761 kb on - strand, within HMPREF1058_RS17055at 529.790 kb on + strand, within HMPREF1058_RS17055at 529.793 kb on + strand, within HMPREF1058_RS17055at 529.794 kb on - strand, within HMPREF1058_RS17055at 529.796 kb on - strand, within HMPREF1058_RS17055at 529.823 kb on + strandat 529.824 kb on - strand, within HMPREF1058_RS17055at 529.824 kb on - strand, within HMPREF1058_RS17055at 529.877 kb on + strandat 529.924 kb on - strandat 529.955 kb on + strandat 529.956 kb on - strandat 529.964 kb on - strandat 529.991 kb on - strandat 529.991 kb on - strandat 530.032 kb on + strandat 530.032 kb on + strandat 530.033 kb on - strandat 530.034 kb on + strandat 530.037 kb on - strandat 530.077 kb on - strand, within HMPREF1058_RS17050at 530.108 kb on - strand, within HMPREF1058_RS17050at 530.108 kb on - strand, within HMPREF1058_RS17050at 530.110 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.112 kb on - strand, within HMPREF1058_RS17050at 530.151 kb on + strand, within HMPREF1058_RS17050at 530.239 kb on - strand, within HMPREF1058_RS17050at 530.281 kb on + strand, within HMPREF1058_RS17050at 530.283 kb on + strand, within HMPREF1058_RS17050at 530.283 kb on + strand, within HMPREF1058_RS17050at 530.298 kb on + strand, within HMPREF1058_RS17050at 530.344 kb on - strand, within HMPREF1058_RS17050at 530.417 kb on - strand, within HMPREF1058_RS17050at 530.440 kb on + strand, within HMPREF1058_RS17050at 530.441 kb on - strand, within HMPREF1058_RS17050at 530.568 kb on + strand, within HMPREF1058_RS17050at 530.588 kb on - strand, within HMPREF1058_RS17050at 530.710 kb on + strand, within HMPREF1058_RS17050at 530.751 kb on - strand, within HMPREF1058_RS17050at 530.751 kb on - strand, within HMPREF1058_RS17050at 530.756 kb on + strand, within HMPREF1058_RS17050at 530.756 kb on + strand, within HMPREF1058_RS17050at 530.826 kb on + strand, within HMPREF1058_RS17050at 530.831 kb on + strandat 530.848 kb on - strandat 530.848 kb on - strandat 531.165 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.324 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.516 kb on + strand, within HMPREF1058_RS17045at 531.517 kb on - strand, within HMPREF1058_RS17045at 531.702 kb on - strandat 531.723 kb on + strandat 531.724 kb on - strandat 531.799 kb on - strandat 531.859 kb on + strandat 531.859 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
remove
528,977 - +0.4
528,981 - +1.7
528,992 + -0.5
529,027 - +1.0
529,194 + HMPREF1058_RS17055 0.22 -2.1
529,263 + HMPREF1058_RS17055 0.29 +0.6
529,263 + HMPREF1058_RS17055 0.29 +0.4
529,313 + HMPREF1058_RS17055 0.34 +1.4
529,314 - +1.9
529,322 + HMPREF1058_RS17055 0.35 -0.2
529,483 - HMPREF1058_RS17055 0.51 -0.1
529,514 + HMPREF1058_RS17055 0.54 -0.1
529,514 + HMPREF1058_RS17055 0.54 +0.1
529,514 + HMPREF1058_RS17055 0.54 -0.1
529,515 - HMPREF1058_RS17055 0.54 -1.6
529,515 - HMPREF1058_RS17055 0.54 +0.4
529,515 - HMPREF1058_RS17055 0.54 -0.7
529,530 - HMPREF1058_RS17055 0.55 +0.1
529,552 + HMPREF1058_RS17055 0.58 +0.4
529,610 - HMPREF1058_RS17055 0.63 -0.4
529,648 + HMPREF1058_RS17055 0.67 +0.9
529,761 - HMPREF1058_RS17055 0.78 -0.1
529,790 + HMPREF1058_RS17055 0.81 -0.6
529,793 + HMPREF1058_RS17055 0.82 -1.2
529,794 - HMPREF1058_RS17055 0.82 -0.6
529,796 - HMPREF1058_RS17055 0.82 +0.1
529,823 + -0.4
529,824 - HMPREF1058_RS17055 0.85 -2.1
529,824 - HMPREF1058_RS17055 0.85 +0.3
529,877 + -2.1
529,924 - +0.5
529,955 + +0.1
529,956 - +0.9
529,964 - -0.4
529,991 - -0.1
529,991 - -0.8
530,032 + +0.0
530,032 + +0.7
530,033 - -0.5
530,034 + +2.5
530,037 - -1.1
530,077 - HMPREF1058_RS17050 0.11 -0.6
530,108 - HMPREF1058_RS17050 0.14 +0.1
530,108 - HMPREF1058_RS17050 0.14 -0.1
530,110 - HMPREF1058_RS17050 0.14 +0.8
530,112 - HMPREF1058_RS17050 0.15 -1.2
530,112 - HMPREF1058_RS17050 0.15 -0.9
530,112 - HMPREF1058_RS17050 0.15 -0.0
530,112 - HMPREF1058_RS17050 0.15 +0.4
530,151 + HMPREF1058_RS17050 0.19 -0.5
530,239 - HMPREF1058_RS17050 0.28 -0.9
530,281 + HMPREF1058_RS17050 0.32 -0.4
530,283 + HMPREF1058_RS17050 0.33 -0.5
530,283 + HMPREF1058_RS17050 0.33 +0.8
530,298 + HMPREF1058_RS17050 0.34 -0.9
530,344 - HMPREF1058_RS17050 0.39 -1.0
530,417 - HMPREF1058_RS17050 0.47 -1.0
530,440 + HMPREF1058_RS17050 0.49 -1.8
530,441 - HMPREF1058_RS17050 0.49 -2.7
530,568 + HMPREF1058_RS17050 0.63 -1.0
530,588 - HMPREF1058_RS17050 0.65 -0.4
530,710 + HMPREF1058_RS17050 0.77 +1.9
530,751 - HMPREF1058_RS17050 0.82 -1.2
530,751 - HMPREF1058_RS17050 0.82 -1.1
530,756 + HMPREF1058_RS17050 0.82 -1.3
530,756 + HMPREF1058_RS17050 0.82 -1.1
530,826 + HMPREF1058_RS17050 0.90 -0.3
530,831 + +1.9
530,848 - -1.4
530,848 - -0.2
531,165 + HMPREF1058_RS17045 0.27 -0.3
531,323 + HMPREF1058_RS17045 0.45 -0.8
531,323 + HMPREF1058_RS17045 0.45 -0.9
531,324 - HMPREF1058_RS17045 0.46 -1.1
531,513 - HMPREF1058_RS17045 0.68 -0.3
531,513 - HMPREF1058_RS17045 0.68 -0.9
531,516 + HMPREF1058_RS17045 0.68 +1.9
531,517 - HMPREF1058_RS17045 0.68 +0.7
531,702 - -1.2
531,723 + -1.4
531,724 - -2.3
531,799 - +0.2
531,859 + +0.5
531,859 + -0.3

Or see this region's nucleotide sequence