Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17055 and HMPREF1058_RS17050 overlap by 4 nucleotides HMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotides HMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotides
HMPREF1058_RS17055: HMPREF1058_RS17055 - flippase-like domain-containing protein, at 528,975 to 529,976
_RS17055
HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923
_RS17050
HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782
_RS17045
HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512
_RS17040
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2 at 528.977 kb on - strand at 528.981 kb on - strand at 528.992 kb on + strand at 529.027 kb on - strand at 529.194 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.263 kb on + strand, within HMPREF1058_RS17055 at 529.313 kb on + strand, within HMPREF1058_RS17055 at 529.314 kb on - strand at 529.322 kb on + strand, within HMPREF1058_RS17055 at 529.483 kb on - strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.514 kb on + strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.515 kb on - strand, within HMPREF1058_RS17055 at 529.530 kb on - strand, within HMPREF1058_RS17055 at 529.552 kb on + strand, within HMPREF1058_RS17055 at 529.610 kb on - strand, within HMPREF1058_RS17055 at 529.648 kb on + strand, within HMPREF1058_RS17055 at 529.761 kb on - strand, within HMPREF1058_RS17055 at 529.790 kb on + strand, within HMPREF1058_RS17055 at 529.793 kb on + strand, within HMPREF1058_RS17055 at 529.794 kb on - strand, within HMPREF1058_RS17055 at 529.796 kb on - strand, within HMPREF1058_RS17055 at 529.823 kb on + strand at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.824 kb on - strand, within HMPREF1058_RS17055 at 529.877 kb on + strand at 529.924 kb on - strand at 529.955 kb on + strand at 529.956 kb on - strand at 529.964 kb on - strand at 529.991 kb on - strand at 529.991 kb on - strand at 530.032 kb on + strand at 530.032 kb on + strand at 530.033 kb on - strand at 530.034 kb on + strand at 530.037 kb on - strand at 530.077 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.108 kb on - strand, within HMPREF1058_RS17050 at 530.110 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.112 kb on - strand, within HMPREF1058_RS17050 at 530.151 kb on + strand, within HMPREF1058_RS17050 at 530.239 kb on - strand, within HMPREF1058_RS17050 at 530.281 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.283 kb on + strand, within HMPREF1058_RS17050 at 530.298 kb on + strand, within HMPREF1058_RS17050 at 530.344 kb on - strand, within HMPREF1058_RS17050 at 530.417 kb on - strand, within HMPREF1058_RS17050 at 530.440 kb on + strand, within HMPREF1058_RS17050 at 530.441 kb on - strand, within HMPREF1058_RS17050 at 530.568 kb on + strand, within HMPREF1058_RS17050 at 530.588 kb on - strand, within HMPREF1058_RS17050 at 530.710 kb on + strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.751 kb on - strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.756 kb on + strand, within HMPREF1058_RS17050 at 530.826 kb on + strand, within HMPREF1058_RS17050 at 530.831 kb on + strand at 530.848 kb on - strand at 530.848 kb on - strand at 531.165 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.323 kb on + strand, within HMPREF1058_RS17045 at 531.324 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.513 kb on - strand, within HMPREF1058_RS17045 at 531.516 kb on + strand, within HMPREF1058_RS17045 at 531.517 kb on - strand, within HMPREF1058_RS17045 at 531.702 kb on - strand at 531.723 kb on + strand at 531.724 kb on - strand at 531.799 kb on - strand at 531.859 kb on + strand at 531.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 528,977 - +0.4 528,981 - +1.7 528,992 + -0.5 529,027 - +1.0 529,194 + HMPREF1058_RS17055 0.22 -2.1 529,263 + HMPREF1058_RS17055 0.29 +0.6 529,263 + HMPREF1058_RS17055 0.29 +0.4 529,313 + HMPREF1058_RS17055 0.34 +1.4 529,314 - +1.9 529,322 + HMPREF1058_RS17055 0.35 -0.2 529,483 - HMPREF1058_RS17055 0.51 -0.1 529,514 + HMPREF1058_RS17055 0.54 -0.1 529,514 + HMPREF1058_RS17055 0.54 +0.1 529,514 + HMPREF1058_RS17055 0.54 -0.1 529,515 - HMPREF1058_RS17055 0.54 -1.6 529,515 - HMPREF1058_RS17055 0.54 +0.4 529,515 - HMPREF1058_RS17055 0.54 -0.7 529,530 - HMPREF1058_RS17055 0.55 +0.1 529,552 + HMPREF1058_RS17055 0.58 +0.4 529,610 - HMPREF1058_RS17055 0.63 -0.4 529,648 + HMPREF1058_RS17055 0.67 +0.9 529,761 - HMPREF1058_RS17055 0.78 -0.1 529,790 + HMPREF1058_RS17055 0.81 -0.6 529,793 + HMPREF1058_RS17055 0.82 -1.2 529,794 - HMPREF1058_RS17055 0.82 -0.6 529,796 - HMPREF1058_RS17055 0.82 +0.1 529,823 + -0.4 529,824 - HMPREF1058_RS17055 0.85 -2.1 529,824 - HMPREF1058_RS17055 0.85 +0.3 529,877 + -2.1 529,924 - +0.5 529,955 + +0.1 529,956 - +0.9 529,964 - -0.4 529,991 - -0.1 529,991 - -0.8 530,032 + +0.0 530,032 + +0.7 530,033 - -0.5 530,034 + +2.5 530,037 - -1.1 530,077 - HMPREF1058_RS17050 0.11 -0.6 530,108 - HMPREF1058_RS17050 0.14 +0.1 530,108 - HMPREF1058_RS17050 0.14 -0.1 530,110 - HMPREF1058_RS17050 0.14 +0.8 530,112 - HMPREF1058_RS17050 0.15 -1.2 530,112 - HMPREF1058_RS17050 0.15 -0.9 530,112 - HMPREF1058_RS17050 0.15 -0.0 530,112 - HMPREF1058_RS17050 0.15 +0.4 530,151 + HMPREF1058_RS17050 0.19 -0.5 530,239 - HMPREF1058_RS17050 0.28 -0.9 530,281 + HMPREF1058_RS17050 0.32 -0.4 530,283 + HMPREF1058_RS17050 0.33 -0.5 530,283 + HMPREF1058_RS17050 0.33 +0.8 530,298 + HMPREF1058_RS17050 0.34 -0.9 530,344 - HMPREF1058_RS17050 0.39 -1.0 530,417 - HMPREF1058_RS17050 0.47 -1.0 530,440 + HMPREF1058_RS17050 0.49 -1.8 530,441 - HMPREF1058_RS17050 0.49 -2.7 530,568 + HMPREF1058_RS17050 0.63 -1.0 530,588 - HMPREF1058_RS17050 0.65 -0.4 530,710 + HMPREF1058_RS17050 0.77 +1.9 530,751 - HMPREF1058_RS17050 0.82 -1.2 530,751 - HMPREF1058_RS17050 0.82 -1.1 530,756 + HMPREF1058_RS17050 0.82 -1.3 530,756 + HMPREF1058_RS17050 0.82 -1.1 530,826 + HMPREF1058_RS17050 0.90 -0.3 530,831 + +1.9 530,848 - -1.4 530,848 - -0.2 531,165 + HMPREF1058_RS17045 0.27 -0.3 531,323 + HMPREF1058_RS17045 0.45 -0.8 531,323 + HMPREF1058_RS17045 0.45 -0.9 531,324 - HMPREF1058_RS17045 0.46 -1.1 531,513 - HMPREF1058_RS17045 0.68 -0.3 531,513 - HMPREF1058_RS17045 0.68 -0.9 531,516 + HMPREF1058_RS17045 0.68 +1.9 531,517 - HMPREF1058_RS17045 0.68 +0.7 531,702 - -1.2 531,723 + -1.4 531,724 - -2.3 531,799 - +0.2 531,859 + +0.5 531,859 + -0.3
Or see this region's nucleotide sequence