Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16740 and HMPREF1058_RS16735 are separated by 36 nucleotides HMPREF1058_RS16735 and HMPREF1058_RS16730 are separated by 208 nucleotides HMPREF1058_RS16730 and HMPREF1058_RS16725 are separated by 13 nucleotides
HMPREF1058_RS16740: HMPREF1058_RS16740 - TPM domain-containing protein, at 606,580 to 607,500
_RS16740
HMPREF1058_RS16735: HMPREF1058_RS16735 - LemA family protein, at 607,537 to 608,118
_RS16735
HMPREF1058_RS16730: HMPREF1058_RS16730 - chorismate synthase, at 608,327 to 609,403
_RS16730
HMPREF1058_RS16725: HMPREF1058_RS16725 - dipeptidase, at 609,417 to 610,769
_RS16725
Position (kb) 608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 607.355 kb on - strand, within HMPREF1058_RS16740 at 607.528 kb on + strand at 607.528 kb on + strand at 607.530 kb on + strand at 607.530 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.532 kb on + strand at 607.533 kb on - strand at 607.533 kb on - strand at 607.560 kb on - strand at 607.563 kb on - strand at 607.605 kb on + strand, within HMPREF1058_RS16735 at 607.718 kb on - strand, within HMPREF1058_RS16735 at 607.847 kb on + strand, within HMPREF1058_RS16735 at 607.847 kb on + strand, within HMPREF1058_RS16735 at 607.964 kb on + strand, within HMPREF1058_RS16735 at 607.964 kb on + strand, within HMPREF1058_RS16735 at 607.999 kb on + strand, within HMPREF1058_RS16735 at 608.001 kb on + strand, within HMPREF1058_RS16735 at 608.002 kb on - strand, within HMPREF1058_RS16735 at 608.123 kb on + strand at 608.146 kb on + strand at 608.269 kb on + strand at 608.269 kb on + strand at 608.271 kb on + strand at 608.272 kb on - strand at 608.272 kb on - strand at 608.274 kb on + strand at 608.317 kb on + strand at 608.326 kb on + strand at 608.488 kb on + strand, within HMPREF1058_RS16730 at 608.513 kb on - strand, within HMPREF1058_RS16730 at 608.650 kb on + strand, within HMPREF1058_RS16730 at 608.655 kb on - strand, within HMPREF1058_RS16730 at 608.728 kb on - strand, within HMPREF1058_RS16730 at 608.799 kb on + strand, within HMPREF1058_RS16730 at 608.850 kb on + strand, within HMPREF1058_RS16730 at 609.041 kb on - strand, within HMPREF1058_RS16730 at 609.171 kb on + strand, within HMPREF1058_RS16730 at 609.171 kb on + strand, within HMPREF1058_RS16730 at 609.203 kb on + strand, within HMPREF1058_RS16730 at 609.258 kb on + strand, within HMPREF1058_RS16730 at 609.391 kb on + strand at 609.399 kb on + strand at 609.402 kb on - strand at 609.402 kb on - strand at 609.515 kb on + strand at 609.616 kb on + strand, within HMPREF1058_RS16725 at 609.635 kb on - strand, within HMPREF1058_RS16725 at 609.664 kb on - strand, within HMPREF1058_RS16725 at 609.664 kb on - strand at 609.680 kb on - strand, within HMPREF1058_RS16725 at 609.811 kb on - strand, within HMPREF1058_RS16725 at 609.814 kb on + strand at 609.893 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.911 kb on + strand, within HMPREF1058_RS16725 at 609.935 kb on - strand, within HMPREF1058_RS16725 at 610.082 kb on + strand, within HMPREF1058_RS16725 at 610.089 kb on - strand, within HMPREF1058_RS16725 at 610.100 kb on + strand, within HMPREF1058_RS16725 at 610.101 kb on - strand, within HMPREF1058_RS16725 at 610.162 kb on + strand, within HMPREF1058_RS16725 at 610.163 kb on - strand, within HMPREF1058_RS16725 at 610.243 kb on + strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.287 kb on - strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.334 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.357 kb on + strand, within HMPREF1058_RS16725 at 610.358 kb on - strand, within HMPREF1058_RS16725 at 610.375 kb on - strand, within HMPREF1058_RS16725
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 607,355 - HMPREF1058_RS16740 0.84 -0.2 607,528 + +0.9 607,528 + +0.2 607,530 + -0.4 607,530 + +1.9 607,532 + +0.9 607,532 + -0.4 607,532 + +0.4 607,532 + -1.1 607,532 + -1.8 607,533 - +0.2 607,533 - +0.5 607,560 - -1.6 607,563 - -0.2 607,605 + HMPREF1058_RS16735 0.12 -0.2 607,718 - HMPREF1058_RS16735 0.31 -1.0 607,847 + HMPREF1058_RS16735 0.53 -0.1 607,847 + HMPREF1058_RS16735 0.53 +0.7 607,964 + HMPREF1058_RS16735 0.73 +0.3 607,964 + HMPREF1058_RS16735 0.73 +0.2 607,999 + HMPREF1058_RS16735 0.79 -0.0 608,001 + HMPREF1058_RS16735 0.80 -1.5 608,002 - HMPREF1058_RS16735 0.80 -1.1 608,123 + -0.4 608,146 + -0.9 608,269 + -0.6 608,269 + +0.8 608,271 + -0.3 608,272 - -2.4 608,272 - -1.9 608,274 + -0.8 608,317 + -0.2 608,326 + -1.4 608,488 + HMPREF1058_RS16730 0.15 +2.8 608,513 - HMPREF1058_RS16730 0.17 -3.5 608,650 + HMPREF1058_RS16730 0.30 -2.8 608,655 - HMPREF1058_RS16730 0.30 -1.1 608,728 - HMPREF1058_RS16730 0.37 -0.1 608,799 + HMPREF1058_RS16730 0.44 -0.6 608,850 + HMPREF1058_RS16730 0.49 -2.1 609,041 - HMPREF1058_RS16730 0.66 -0.9 609,171 + HMPREF1058_RS16730 0.78 +1.4 609,171 + HMPREF1058_RS16730 0.78 -1.9 609,203 + HMPREF1058_RS16730 0.81 -2.1 609,258 + HMPREF1058_RS16730 0.86 -2.2 609,391 + -0.9 609,399 + +0.0 609,402 - -1.2 609,402 - +0.1 609,515 + -0.4 609,616 + HMPREF1058_RS16725 0.15 -0.9 609,635 - HMPREF1058_RS16725 0.16 +1.2 609,664 - HMPREF1058_RS16725 0.18 -0.3 609,664 - -0.6 609,680 - HMPREF1058_RS16725 0.19 -0.1 609,811 - HMPREF1058_RS16725 0.29 -1.8 609,814 + -0.4 609,893 + HMPREF1058_RS16725 0.35 -1.2 609,911 + HMPREF1058_RS16725 0.37 +1.4 609,911 + HMPREF1058_RS16725 0.37 +1.2 609,911 + HMPREF1058_RS16725 0.37 +1.6 609,935 - HMPREF1058_RS16725 0.38 -1.0 610,082 + HMPREF1058_RS16725 0.49 +0.2 610,089 - HMPREF1058_RS16725 0.50 -0.2 610,100 + HMPREF1058_RS16725 0.50 +0.8 610,101 - HMPREF1058_RS16725 0.51 +0.1 610,162 + HMPREF1058_RS16725 0.55 +0.4 610,163 - HMPREF1058_RS16725 0.55 -2.6 610,243 + HMPREF1058_RS16725 0.61 -0.1 610,287 - HMPREF1058_RS16725 0.64 -0.3 610,287 - HMPREF1058_RS16725 0.64 +0.5 610,287 - HMPREF1058_RS16725 0.64 -0.9 610,334 + HMPREF1058_RS16725 0.68 +1.1 610,334 + HMPREF1058_RS16725 0.68 -0.7 610,334 + HMPREF1058_RS16725 0.68 +0.2 610,357 + HMPREF1058_RS16725 0.69 +0.1 610,357 + HMPREF1058_RS16725 0.69 -0.3 610,358 - HMPREF1058_RS16725 0.70 +1.6 610,375 - HMPREF1058_RS16725 0.71 +0.0
Or see this region's nucleotide sequence