Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15520

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
896,258	+		HMPREF1058_RS15525	0.51	-0.4
896,260	+		HMPREF1058_RS15525	0.52	+0.2
896,260	+		HMPREF1058_RS15525	0.52	+0.4
896,401	-				-0.7
896,470	+		HMPREF1058_RS15520	0.15	+0.7
896,471	-		HMPREF1058_RS15520	0.15	+1.7
896,538	+		HMPREF1058_RS15520	0.27	-2.7
896,591	+		HMPREF1058_RS15520	0.36	-1.7
896,667	+		HMPREF1058_RS15520	0.50	+0.2
896,756	-		HMPREF1058_RS15520	0.66	-0.2
896,837	+		HMPREF1058_RS15520	0.80	-1.4
896,888	-		HMPREF1058_RS15520	0.89	-1.8
896,890	+		HMPREF1058_RS15520	0.90	-1.5
896,911	+				+2.6
897,022	+				+0.4
897,023	-				-1.5
897,023	-				-0.2
897,023	-				+0.1
897,028	+				-0.7
897,032	+				-0.2
897,033	-				-0.9
897,046	-				+0.4
897,046	-				-0.1
897,046	-				-0.4
897,046	-				-0.9
897,235	-		HMPREF1058_RS15515	0.11	+0.6
897,319	-		HMPREF1058_RS15515	0.16	+0.2
897,348	+		HMPREF1058_RS15515	0.17	-0.6
897,348	+		HMPREF1058_RS15515	0.17	-0.5
897,348	+		HMPREF1058_RS15515	0.17	+0.7
897,459	+		HMPREF1058_RS15515	0.24	+0.3
897,639	+		HMPREF1058_RS15515	0.33	-0.8
897,666	+		HMPREF1058_RS15515	0.35	-0.6
897,746	-		HMPREF1058_RS15515	0.39	+0.8
897,813	+		HMPREF1058_RS15515	0.43	-0.3
897,845	+		HMPREF1058_RS15515	0.45	-0.3
897,846	-		HMPREF1058_RS15515	0.45	+1.2
897,856	+		HMPREF1058_RS15515	0.45	-0.3
897,857	-		HMPREF1058_RS15515	0.45	+0.8
897,857	-		HMPREF1058_RS15515	0.45	-1.1
897,887	+		HMPREF1058_RS15515	0.47	-0.8