Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14830

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,091,492	+		HMPREF1058_RS14835	0.51	-0.3
1,091,737	+		HMPREF1058_RS14835	0.66	+0.4
1,091,935	+		HMPREF1058_RS14835	0.77	+0.2
1,092,095	+		HMPREF1058_RS14835	0.86	-1.2
1,092,103	+		HMPREF1058_RS14835	0.87	-2.0
1,092,220	+				-0.8
1,092,255	+				+0.0
1,092,309	+				-1.0
1,092,342	+				+0.5
1,092,353	+				-0.3
1,092,397	+				+0.8
1,092,405	+				+0.1
1,092,405	+				+0.3
1,094,064	+		HMPREF1058_RS14830	0.85	-1.3
1,094,093	-		HMPREF1058_RS14830	0.87	-1.5
1,094,136	-		HMPREF1058_RS14830	0.89	-0.4
1,094,208	-				-2.0
1,094,208	-				+0.0
1,094,257	-				+0.8
1,094,257	-				-0.4
1,094,319	-				+1.0
1,094,365	+				-0.7
1,094,366	-				+1.4
1,094,376	+				-0.2
1,094,435	-				+0.2
1,094,454	+				-0.9
1,094,461	-				-0.5
1,094,461	-				-0.3
1,094,568	+				+0.9
1,094,577	+				-0.6
1,094,578	-				+0.2
1,094,618	+				-1.9
1,094,619	-		HMPREF1058_RS14825	0.10	+1.1
1,094,619	-		HMPREF1058_RS14825	0.10	+0.3
1,094,623	-		HMPREF1058_RS14825	0.11	+0.9
1,094,623	-		HMPREF1058_RS14825	0.11	+0.1
1,094,623	-		HMPREF1058_RS14825	0.11	+0.3
1,094,694	+		HMPREF1058_RS14825	0.14	+0.7
1,094,704	+		HMPREF1058_RS14825	0.14	-0.3
1,094,708	-		HMPREF1058_RS14825	0.14	-0.2
1,094,715	+		HMPREF1058_RS14825	0.15	-0.1
1,094,716	-		HMPREF1058_RS14825	0.15	+0.0
1,094,748	-		HMPREF1058_RS14825	0.16	+0.9
1,094,748	-		HMPREF1058_RS14825	0.16	-0.1
1,094,748	-		HMPREF1058_RS14825	0.16	-0.4
1,094,748	-		HMPREF1058_RS14825	0.16	-1.1
1,094,802	+		HMPREF1058_RS14825	0.19	-0.6
1,094,808	+		HMPREF1058_RS14825	0.19	+0.0
1,094,927	+		HMPREF1058_RS14825	0.24	+0.2
1,094,927	+		HMPREF1058_RS14825	0.24	-0.2
1,094,928	-		HMPREF1058_RS14825	0.24	+1.3
1,094,928	-		HMPREF1058_RS14825	0.24	-0.4
1,094,929	+		HMPREF1058_RS14825	0.24	-0.3
1,094,929	+		HMPREF1058_RS14825	0.24	+1.6
1,094,930	-		HMPREF1058_RS14825	0.24	+0.2
1,094,931	+		HMPREF1058_RS14825	0.24	+0.2
1,094,931	+		HMPREF1058_RS14825	0.24	+0.9
1,094,932	-		HMPREF1058_RS14825	0.24	+1.9
1,094,932	-		HMPREF1058_RS14825	0.24	-1.0
1,094,932	-		HMPREF1058_RS14825	0.24	+0.0
1,094,932	-		HMPREF1058_RS14825	0.24	+1.4
1,094,933	+		HMPREF1058_RS14825	0.25	-0.3
1,094,933	+		HMPREF1058_RS14825	0.25	+0.0
1,094,933	+		HMPREF1058_RS14825	0.25	-1.0
1,094,933	+		HMPREF1058_RS14825	0.25	+0.1
1,094,933	+		HMPREF1058_RS14825	0.25	-0.4
1,094,933	+		HMPREF1058_RS14825	0.25	+0.0
1,094,934	-		HMPREF1058_RS14825	0.25	-0.8
1,094,934	-		HMPREF1058_RS14825	0.25	+0.8
1,094,934	-		HMPREF1058_RS14825	0.25	-0.1
1,094,934	-		HMPREF1058_RS14825	0.25	+0.4
1,094,959	+		HMPREF1058_RS14825	0.26	-0.0
1,095,018	+		HMPREF1058_RS14825	0.28	-0.4
1,095,135	-		HMPREF1058_RS14825	0.34	+0.5
1,095,224	+		HMPREF1058_RS14825	0.38	+0.0
1,095,225	-		HMPREF1058_RS14825	0.38	+0.2
1,095,225	-		HMPREF1058_RS14825	0.38	+0.9
1,095,261	+		HMPREF1058_RS14825	0.39	-1.1
1,095,261	+		HMPREF1058_RS14825	0.39	+0.2