Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14605

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14610 and HMPREF1058_RS14605 are separated by 16 nucleotidesHMPREF1058_RS14605 and HMPREF1058_RS14600 are separated by 30 nucleotidesHMPREF1058_RS14600 and HMPREF1058_RS14595 are separated by 8 nucleotides HMPREF1058_RS14610: HMPREF1058_RS14610 - adenylosuccinate synthase, at 1,158,751 to 1,160,022 _RS14610 HMPREF1058_RS14605: HMPREF1058_RS14605 - transcriptional repressor, at 1,160,039 to 1,160,530 _RS14605 HMPREF1058_RS14600: HMPREF1058_RS14600 - DNA alkylation repair protein, at 1,160,561 to 1,161,229 _RS14600 HMPREF1058_RS14595: HMPREF1058_RS14595 - dihydrofolate reductase, at 1,161,238 to 1,163,250 _RS14595 Position (kb) 1160 1161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1159.048 kb on - strand, within HMPREF1058_RS14610at 1159.052 kb on - strand, within HMPREF1058_RS14610at 1159.077 kb on + strand, within HMPREF1058_RS14610at 1159.077 kb on + strand, within HMPREF1058_RS14610at 1159.077 kb on + strand, within HMPREF1058_RS14610at 1159.077 kb on + strand, within HMPREF1058_RS14610at 1159.078 kb on - strand, within HMPREF1058_RS14610at 1159.078 kb on - strand, within HMPREF1058_RS14610at 1159.082 kb on + strand, within HMPREF1058_RS14610at 1159.082 kb on + strand, within HMPREF1058_RS14610at 1159.093 kb on + strand, within HMPREF1058_RS14610at 1159.226 kb on + strand, within HMPREF1058_RS14610at 1159.244 kb on + strand, within HMPREF1058_RS14610at 1159.246 kb on + strand, within HMPREF1058_RS14610at 1159.247 kb on - strand, within HMPREF1058_RS14610at 1159.302 kb on + strand, within HMPREF1058_RS14610at 1159.303 kb on - strandat 1159.303 kb on - strand, within HMPREF1058_RS14610at 1159.405 kb on - strand, within HMPREF1058_RS14610at 1159.488 kb on + strand, within HMPREF1058_RS14610at 1159.489 kb on - strand, within HMPREF1058_RS14610at 1159.489 kb on - strand, within HMPREF1058_RS14610at 1159.500 kb on - strand, within HMPREF1058_RS14610at 1159.585 kb on + strand, within HMPREF1058_RS14610at 1159.585 kb on + strand, within HMPREF1058_RS14610at 1159.586 kb on - strand, within HMPREF1058_RS14610at 1159.613 kb on + strand, within HMPREF1058_RS14610at 1159.613 kb on + strand, within HMPREF1058_RS14610at 1159.614 kb on - strand, within HMPREF1058_RS14610at 1159.617 kb on + strand, within HMPREF1058_RS14610at 1159.618 kb on - strand, within HMPREF1058_RS14610at 1159.618 kb on - strand, within HMPREF1058_RS14610at 1159.618 kb on - strand, within HMPREF1058_RS14610at 1159.618 kb on - strand, within HMPREF1058_RS14610at 1159.625 kb on - strand, within HMPREF1058_RS14610at 1159.626 kb on + strand, within HMPREF1058_RS14610at 1159.662 kb on + strand, within HMPREF1058_RS14610at 1159.829 kb on - strand, within HMPREF1058_RS14610at 1159.900 kb on - strandat 1159.900 kb on - strandat 1159.900 kb on - strandat 1159.934 kb on - strandat 1159.934 kb on - strandat 1160.003 kb on - strandat 1160.003 kb on - strandat 1160.074 kb on + strandat 1160.074 kb on + strandat 1160.074 kb on + strandat 1160.075 kb on - strandat 1160.075 kb on - strandat 1160.087 kb on + strandat 1160.088 kb on - strandat 1160.094 kb on + strand, within HMPREF1058_RS14605at 1160.094 kb on + strand, within HMPREF1058_RS14605at 1160.094 kb on + strand, within HMPREF1058_RS14605at 1160.099 kb on - strand, within HMPREF1058_RS14605at 1160.100 kb on + strand, within HMPREF1058_RS14605at 1160.100 kb on + strand, within HMPREF1058_RS14605at 1160.101 kb on + strand, within HMPREF1058_RS14605at 1160.101 kb on - strand, within HMPREF1058_RS14605at 1160.101 kb on - strand, within HMPREF1058_RS14605at 1160.101 kb on - strand, within HMPREF1058_RS14605at 1160.101 kb on - strand, within HMPREF1058_RS14605at 1160.205 kb on - strand, within HMPREF1058_RS14605at 1160.272 kb on + strand, within HMPREF1058_RS14605at 1160.311 kb on + strand, within HMPREF1058_RS14605at 1160.313 kb on + strand, within HMPREF1058_RS14605at 1160.358 kb on + strand, within HMPREF1058_RS14605at 1160.404 kb on + strand, within HMPREF1058_RS14605at 1160.405 kb on - strand, within HMPREF1058_RS14605at 1160.405 kb on - strand, within HMPREF1058_RS14605at 1160.405 kb on - strand, within HMPREF1058_RS14605at 1160.416 kb on + strand, within HMPREF1058_RS14605at 1160.416 kb on + strand, within HMPREF1058_RS14605at 1160.416 kb on + strand, within HMPREF1058_RS14605at 1160.416 kb on + strand, within HMPREF1058_RS14605at 1160.417 kb on - strand, within HMPREF1058_RS14605at 1160.481 kb on - strandat 1160.550 kb on - strandat 1160.550 kb on - strandat 1160.588 kb on + strandat 1160.741 kb on + strand, within HMPREF1058_RS14600at 1160.838 kb on - strand, within HMPREF1058_RS14600at 1160.893 kb on - strand, within HMPREF1058_RS14600at 1160.897 kb on + strand, within HMPREF1058_RS14600at 1160.963 kb on + strand, within HMPREF1058_RS14600at 1160.964 kb on - strandat 1160.973 kb on - strandat 1161.002 kb on + strand, within HMPREF1058_RS14600at 1161.130 kb on + strand, within HMPREF1058_RS14600at 1161.133 kb on - strand, within HMPREF1058_RS14600at 1161.137 kb on + strand, within HMPREF1058_RS14600at 1161.200 kb on + strandat 1161.200 kb on + strandat 1161.201 kb on - strandat 1161.210 kb on - strandat 1161.222 kb on - strandat 1161.230 kb on - strandat 1161.233 kb on + strandat 1161.234 kb on - strandat 1161.234 kb on - strandat 1161.250 kb on - strandat 1161.276 kb on + strandat 1161.284 kb on - strandat 1161.311 kb on + strandat 1161.312 kb on - strandat 1161.312 kb on - strandat 1161.329 kb on - strandat 1161.363 kb on - strandat 1161.386 kb on + strandat 1161.514 kb on + strand, within HMPREF1058_RS14595

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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1,159,048 - HMPREF1058_RS14610 0.23 -1.4
1,159,052 - HMPREF1058_RS14610 0.24 -1.5
1,159,077 + HMPREF1058_RS14610 0.26 -1.1
1,159,077 + HMPREF1058_RS14610 0.26 -1.1
1,159,077 + HMPREF1058_RS14610 0.26 -2.8
1,159,077 + HMPREF1058_RS14610 0.26 +0.5
1,159,078 - HMPREF1058_RS14610 0.26 -0.7
1,159,078 - HMPREF1058_RS14610 0.26 -0.8
1,159,082 + HMPREF1058_RS14610 0.26 -2.5
1,159,082 + HMPREF1058_RS14610 0.26 -2.1
1,159,093 + HMPREF1058_RS14610 0.27 -1.3
1,159,226 + HMPREF1058_RS14610 0.37 -2.3
1,159,244 + HMPREF1058_RS14610 0.39 -2.4
1,159,246 + HMPREF1058_RS14610 0.39 -1.9
1,159,247 - HMPREF1058_RS14610 0.39 -1.5
1,159,302 + HMPREF1058_RS14610 0.43 -0.2
1,159,303 - -1.8
1,159,303 - HMPREF1058_RS14610 0.43 -1.9
1,159,405 - HMPREF1058_RS14610 0.51 -0.7
1,159,488 + HMPREF1058_RS14610 0.58 -0.4
1,159,489 - HMPREF1058_RS14610 0.58 -1.4
1,159,489 - HMPREF1058_RS14610 0.58 -1.5
1,159,500 - HMPREF1058_RS14610 0.59 -2.6
1,159,585 + HMPREF1058_RS14610 0.66 -0.3
1,159,585 + HMPREF1058_RS14610 0.66 -2.5
1,159,586 - HMPREF1058_RS14610 0.66 -2.5
1,159,613 + HMPREF1058_RS14610 0.68 -1.7
1,159,613 + HMPREF1058_RS14610 0.68 -2.1
1,159,614 - HMPREF1058_RS14610 0.68 -2.0
1,159,617 + HMPREF1058_RS14610 0.68 -3.4
1,159,618 - HMPREF1058_RS14610 0.68 -2.9
1,159,618 - HMPREF1058_RS14610 0.68 -1.6
1,159,618 - HMPREF1058_RS14610 0.68 +1.3
1,159,618 - HMPREF1058_RS14610 0.68 -1.0
1,159,625 - HMPREF1058_RS14610 0.69 -1.4
1,159,626 + HMPREF1058_RS14610 0.69 -0.4
1,159,662 + HMPREF1058_RS14610 0.72 -2.2
1,159,829 - HMPREF1058_RS14610 0.85 -1.6
1,159,900 - -1.3
1,159,900 - -2.2
1,159,900 - -2.5
1,159,934 - -0.7
1,159,934 - -1.5
1,160,003 - -2.5
1,160,003 - -1.2
1,160,074 + -1.6
1,160,074 + -1.1
1,160,074 + -2.7
1,160,075 - +1.6
1,160,075 - -0.8
1,160,087 + -4.3
1,160,088 - +1.9
1,160,094 + HMPREF1058_RS14605 0.11 -1.4
1,160,094 + HMPREF1058_RS14605 0.11 -1.9
1,160,094 + HMPREF1058_RS14605 0.11 +0.9
1,160,099 - HMPREF1058_RS14605 0.12 +1.9
1,160,100 + HMPREF1058_RS14605 0.12 -1.9
1,160,100 + HMPREF1058_RS14605 0.12 -0.5
1,160,101 + HMPREF1058_RS14605 0.13 -1.1
1,160,101 - HMPREF1058_RS14605 0.13 +0.9
1,160,101 - HMPREF1058_RS14605 0.13 +0.5
1,160,101 - HMPREF1058_RS14605 0.13 -0.1
1,160,101 - HMPREF1058_RS14605 0.13 +0.1
1,160,205 - HMPREF1058_RS14605 0.34 -0.5
1,160,272 + HMPREF1058_RS14605 0.47 -0.7
1,160,311 + HMPREF1058_RS14605 0.55 -1.1
1,160,313 + HMPREF1058_RS14605 0.56 -1.5
1,160,358 + HMPREF1058_RS14605 0.65 -0.4
1,160,404 + HMPREF1058_RS14605 0.74 +0.3
1,160,405 - HMPREF1058_RS14605 0.74 -1.9
1,160,405 - HMPREF1058_RS14605 0.74 -1.0
1,160,405 - HMPREF1058_RS14605 0.74 -1.4
1,160,416 + HMPREF1058_RS14605 0.77 -2.3
1,160,416 + HMPREF1058_RS14605 0.77 -0.7
1,160,416 + HMPREF1058_RS14605 0.77 -1.7
1,160,416 + HMPREF1058_RS14605 0.77 -0.4
1,160,417 - HMPREF1058_RS14605 0.77 +2.3
1,160,481 - +1.1
1,160,550 - +0.2
1,160,550 - -0.4
1,160,588 + -0.4
1,160,741 + HMPREF1058_RS14600 0.27 +0.4
1,160,838 - HMPREF1058_RS14600 0.41 -0.7
1,160,893 - HMPREF1058_RS14600 0.50 +1.1
1,160,897 + HMPREF1058_RS14600 0.50 -0.4
1,160,963 + HMPREF1058_RS14600 0.60 +0.3
1,160,964 - -1.9
1,160,973 - -0.1
1,161,002 + HMPREF1058_RS14600 0.66 +0.6
1,161,130 + HMPREF1058_RS14600 0.85 +0.3
1,161,133 - HMPREF1058_RS14600 0.86 +1.0
1,161,137 + HMPREF1058_RS14600 0.86 -0.3
1,161,200 + +0.3
1,161,200 + -0.7
1,161,201 - -0.4
1,161,210 - +0.5
1,161,222 - +0.4
1,161,230 - +0.2
1,161,233 + +0.9
1,161,234 - -1.4
1,161,234 - +0.3
1,161,250 - -0.0
1,161,276 + -0.1
1,161,284 - +0.2
1,161,311 + -0.3
1,161,312 - -0.8
1,161,312 - +0.6
1,161,329 - +0.2
1,161,363 - -0.7
1,161,386 + -1.3
1,161,514 + HMPREF1058_RS14595 0.14 +0.1

Or see this region's nucleotide sequence