Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14590

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,162,406	+		HMPREF1058_RS14595	0.58	-0.4
1,162,438	-		HMPREF1058_RS14595	0.60	+0.1
1,162,514	+		HMPREF1058_RS14595	0.63	-0.4
1,162,524	+		HMPREF1058_RS14595	0.64	+0.6
1,162,629	+		HMPREF1058_RS14595	0.69	-0.8
1,162,630	-		HMPREF1058_RS14595	0.69	+1.2
1,162,950	-		HMPREF1058_RS14595	0.85	-0.6
1,163,002	-		HMPREF1058_RS14595	0.88	-0.0
1,163,002	-		HMPREF1058_RS14595	0.88	-0.1
1,163,002	-		HMPREF1058_RS14595	0.88	-0.2
1,163,005	+		HMPREF1058_RS14595	0.88	+1.4
1,163,023	-		HMPREF1058_RS14595	0.89	-1.2
1,163,028	+		HMPREF1058_RS14595	0.89	-1.2
1,163,039	+		HMPREF1058_RS14595	0.89	+0.3
1,163,096	+				+0.5
1,163,141	+				-0.4
1,163,187	+				-1.1
1,163,187	+				+0.2
1,163,221	-				-2.0
1,163,271	+				-0.7
1,163,325	+				-2.5
1,163,328	-				-1.4
1,163,371	-				-1.7
1,163,444	-		HMPREF1058_RS14590	0.21	-0.9
1,163,472	+		HMPREF1058_RS14590	0.27	-0.1
1,163,479	-		HMPREF1058_RS14590	0.28	+0.9
1,163,518	-		HMPREF1058_RS14590	0.37	-1.8
1,163,590	-		HMPREF1058_RS14590	0.52	+0.9
1,163,627	+		HMPREF1058_RS14590	0.60	-1.0
1,163,851	-				-1.6
1,163,855	-				-0.1
1,163,859	-				-0.8
1,163,869	-				-0.2
1,163,872	+				-1.8
1,163,991	+				+0.6
1,163,991	+				-0.2
1,163,992	-				+0.6
1,164,012	+				-0.8
1,164,123	-				+1.2
1,164,145	+				+1.9
1,164,146	-				+0.1
1,164,146	-				-1.5
1,164,205	+				+1.4
1,164,206	-				+0.8
1,164,217	+				-1.6
1,164,243	+				-0.4
1,164,308	-				-0.5
1,164,363	+		HMPREF1058_RS14585	0.12	-0.6
1,164,364	-				+1.3
1,164,491	-		HMPREF1058_RS14585	0.19	+0.6
1,164,592	+		HMPREF1058_RS14585	0.25	-0.9
1,164,609	+		HMPREF1058_RS14585	0.25	-0.4
1,164,610	-		HMPREF1058_RS14585	0.26	-0.6
1,164,640	-		HMPREF1058_RS14585	0.27	-0.9
1,164,717	-		HMPREF1058_RS14585	0.31	-0.9