Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14580

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,165,077	-		HMPREF1058_RS14585	0.51	-0.9
1,165,133	+		HMPREF1058_RS14585	0.54	-0.4
1,165,196	-		HMPREF1058_RS14585	0.58	-0.2
1,165,227	-		HMPREF1058_RS14585	0.59	+0.2
1,165,269	-		HMPREF1058_RS14585	0.62	+0.7
1,165,283	-		HMPREF1058_RS14585	0.63	-0.9
1,165,385	-		HMPREF1058_RS14585	0.68	-0.2
1,165,411	-		HMPREF1058_RS14585	0.70	-1.0
1,165,413	+		HMPREF1058_RS14585	0.70	-0.3
1,165,414	-		HMPREF1058_RS14585	0.70	-0.2
1,165,419	+		HMPREF1058_RS14585	0.70	-0.5
1,165,495	+		HMPREF1058_RS14585	0.74	-0.5
1,165,496	-		HMPREF1058_RS14585	0.74	-0.9
1,165,562	+		HMPREF1058_RS14585	0.78	-1.9
1,165,563	-		HMPREF1058_RS14585	0.78	+0.4
1,165,609	-		HMPREF1058_RS14585	0.80	-0.1
1,165,762	-		HMPREF1058_RS14585	0.89	-0.3
1,165,798	+				+0.5
1,165,798	+				-0.0
1,165,808	+				+0.7
1,165,818	+				+0.1
1,165,859	-				+0.6
1,165,859	-				+0.0
1,165,867	-				-1.0
1,165,901	+				+0.1
1,165,903	+				-0.2
1,165,904	-				-0.2
1,165,932	+				-1.1
1,165,941	+				+0.4
1,165,951	-				+0.4
1,166,044	+				+0.0
1,166,137	+				+0.5
1,166,353	+		HMPREF1058_RS14580	0.34	-0.7
1,166,374	-		HMPREF1058_RS14580	0.37	-1.6
1,166,399	+		HMPREF1058_RS14580	0.40	-1.5
1,166,422	-		HMPREF1058_RS14580	0.42	-0.7
1,166,422	-		HMPREF1058_RS14580	0.42	-1.2
1,166,432	+		HMPREF1058_RS14580	0.43	-0.5
1,166,432	+		HMPREF1058_RS14580	0.43	-1.2
1,166,432	+		HMPREF1058_RS14580	0.43	-1.2
1,166,433	-		HMPREF1058_RS14580	0.44	-2.7
1,166,434	+		HMPREF1058_RS14580	0.44	-0.4
1,166,434	+		HMPREF1058_RS14580	0.44	-0.4
1,166,435	-		HMPREF1058_RS14580	0.44	-2.0
1,166,455	+		HMPREF1058_RS14580	0.46	-0.4
1,166,455	+		HMPREF1058_RS14580	0.46	-1.3
1,166,473	+		HMPREF1058_RS14580	0.48	+0.9
1,166,473	+		HMPREF1058_RS14580	0.48	+0.0
1,166,474	-		HMPREF1058_RS14580	0.48	-1.0
1,166,478	-		HMPREF1058_RS14580	0.49	-0.9
1,166,478	-		HMPREF1058_RS14580	0.49	-1.2
1,166,478	-		HMPREF1058_RS14580	0.49	+0.2
1,166,513	+				+0.3
1,166,546	-		HMPREF1058_RS14580	0.57	-0.7
1,166,576	-		HMPREF1058_RS14580	0.60	-0.5
1,166,649	-		HMPREF1058_RS14580	0.69	-1.1
1,166,697	-		HMPREF1058_RS14580	0.74	+0.1
1,166,711	+		HMPREF1058_RS14580	0.76	+0.8
1,166,819	-		HMPREF1058_RS14580	0.89	-0.3
1,166,840	+				-2.0
1,166,841	-				+0.1
1,166,841	-				-0.1
1,166,850	+				-0.0
1,166,859	-				-1.7
1,166,859	-				+0.2
1,166,868	+				-0.9
1,166,868	+				-0.4
1,166,868	+				+0.3
1,166,868	+				-0.1
1,166,869	-				+0.0
1,166,869	-				-0.1
1,166,869	-				-0.6
1,166,898	-				+0.9
1,166,920	-				+0.7
1,167,001	-				-0.1
1,167,131	+		HMPREF1058_RS14575	0.20	-0.6
1,167,159	+		HMPREF1058_RS14575	0.26	-0.2
1,167,160	-		HMPREF1058_RS14575	0.26	-0.5
1,167,160	-		HMPREF1058_RS14575	0.26	+0.0
1,167,160	-		HMPREF1058_RS14575	0.26	+0.5
1,167,160	-		HMPREF1058_RS14575	0.26	-0.1
1,167,161	+		HMPREF1058_RS14575	0.26	+0.3
1,167,161	+		HMPREF1058_RS14575	0.26	-0.6
1,167,162	-		HMPREF1058_RS14575	0.27	-0.2
1,167,193	+		HMPREF1058_RS14575	0.33	+1.0
1,167,194	-		HMPREF1058_RS14575	0.33	-1.1
1,167,214	-		HMPREF1058_RS14575	0.37	+0.2
1,167,234	+		HMPREF1058_RS14575	0.41	+0.3
1,167,235	-		HMPREF1058_RS14575	0.42	+1.7
1,167,266	-		HMPREF1058_RS14575	0.48	-0.7
1,167,292	+		HMPREF1058_RS14575	0.53	-0.2
1,167,292	+		HMPREF1058_RS14575	0.53	+0.2
1,167,292	+		HMPREF1058_RS14575	0.53	-0.6
1,167,416	-		HMPREF1058_RS14575	0.79	+0.0
1,167,450	+		HMPREF1058_RS14575	0.86	+0.8
1,167,451	-		HMPREF1058_RS14575	0.86	-0.1
1,167,462	+		HMPREF1058_RS14575	0.88	+0.3
1,167,463	-		HMPREF1058_RS14575	0.88	+0.4
1,167,463	-		HMPREF1058_RS14575	0.88	-0.5
1,167,465	+		HMPREF1058_RS14575	0.89	+0.6
1,167,465	+		HMPREF1058_RS14575	0.89	+0.5
1,167,489	+				+1.8
1,167,490	-				+0.5
1,167,567	+				-0.9
1,167,609	+				-0.1
1,167,614	-				-0.6
1,167,638	+				+0.3
1,167,638	+				+0.4
1,167,676	-				+0.2
1,167,676	-				+0.2
1,167,695	+				-0.8
1,167,695	+				-0.8
1,167,695	+				-0.3
1,167,696	-				+0.3
1,167,729	-		HMPREF1058_RS14570	0.12	-0.2
1,167,731	-		HMPREF1058_RS14570	0.13	+0.3
1,167,785	-		HMPREF1058_RS14570	0.17	-0.2
1,167,915	+		HMPREF1058_RS14570	0.29	-1.0
1,167,915	+		HMPREF1058_RS14570	0.29	+0.0
1,167,915	+		HMPREF1058_RS14570	0.29	+0.9