Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14555

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,170,591	-		HMPREF1058_RS14560	0.37	+0.2
1,170,877	-		HMPREF1058_RS14560	0.55	-0.8
1,170,877	-		HMPREF1058_RS14560	0.55	-1.2
1,171,048	-		HMPREF1058_RS14560	0.66	-0.2
1,171,050	-		HMPREF1058_RS14560	0.67	+0.1
1,171,093	+		HMPREF1058_RS14560	0.69	-1.4
1,171,093	+		HMPREF1058_RS14560	0.69	-1.2
1,171,094	-		HMPREF1058_RS14560	0.69	-0.8
1,171,098	-		HMPREF1058_RS14560	0.70	-1.1
1,171,139	+		HMPREF1058_RS14560	0.72	-2.1
1,171,141	+		HMPREF1058_RS14560	0.72	-2.1
1,171,142	-		HMPREF1058_RS14560	0.73	-1.9
1,171,147	-		HMPREF1058_RS14560	0.73	-1.5
1,171,172	+		HMPREF1058_RS14560	0.74	-3.0
1,171,172	+		HMPREF1058_RS14560	0.74	-1.8
1,171,234	-		HMPREF1058_RS14560	0.78	-1.4
1,171,262	-		HMPREF1058_RS14560	0.80	-0.8
1,171,285	-		HMPREF1058_RS14560	0.82	-0.4
1,171,285	-		HMPREF1058_RS14560	0.82	-0.0
1,171,315	+				-0.5
1,171,375	+		HMPREF1058_RS14560	0.88	-0.6
1,171,376	-		HMPREF1058_RS14560	0.88	-1.4
1,171,438	+				-3.9
1,171,572	+				-1.6
1,171,572	+				-2.5
1,171,688	+		HMPREF1058_RS14555	0.24	-0.1
1,171,815	-		HMPREF1058_RS14555	0.45	+1.2
1,171,939	+		HMPREF1058_RS14555	0.66	-2.5
1,171,940	-		HMPREF1058_RS14555	0.66	-1.0
1,172,126	+				-2.5
1,172,126	+				-1.3
1,172,156	+				-1.8
1,172,161	+				-2.1
1,172,182	+				-1.0
1,172,183	-				-0.3
1,172,275	-				-2.2
1,172,277	+				-3.1
1,172,288	+				-1.9
1,172,411	-		HMPREF1058_RS14550	0.19	-1.5
1,172,535	-		HMPREF1058_RS14550	0.27	-0.8
1,172,548	-		HMPREF1058_RS14550	0.28	-1.7
1,172,582	+		HMPREF1058_RS14550	0.31	-1.3
1,172,628	+		HMPREF1058_RS14550	0.34	-2.3
1,172,689	-		HMPREF1058_RS14550	0.39	-3.6
1,172,722	+		HMPREF1058_RS14550	0.41	-0.6
1,172,722	+		HMPREF1058_RS14550	0.41	-1.3
1,172,722	+		HMPREF1058_RS14550	0.41	-1.9
1,172,723	-		HMPREF1058_RS14550	0.41	-1.9
1,172,809	+		HMPREF1058_RS14550	0.47	-3.7
1,172,809	+		HMPREF1058_RS14550	0.47	-2.0
1,172,810	-		HMPREF1058_RS14550	0.47	-1.8
1,172,812	-		HMPREF1058_RS14550	0.48	-3.3
1,172,878	-		HMPREF1058_RS14550	0.52	-4.0
1,172,878	-		HMPREF1058_RS14550	0.52	-2.1
1,172,979	+		HMPREF1058_RS14550	0.60	-2.5
1,172,979	+		HMPREF1058_RS14550	0.60	-3.7
1,172,980	-		HMPREF1058_RS14550	0.60	+0.9
1,172,980	-		HMPREF1058_RS14550	0.60	-0.4
1,172,980	-		HMPREF1058_RS14550	0.60	-1.3
1,172,981	+		HMPREF1058_RS14550	0.60	-2.2
1,173,036	+		HMPREF1058_RS14550	0.64	-3.4
1,173,066	+		HMPREF1058_RS14550	0.66	-2.6
1,173,066	+		HMPREF1058_RS14550	0.66	-2.6