Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14505

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14515 and HMPREF1058_RS14510 are separated by 6 nucleotidesHMPREF1058_RS14510 and HMPREF1058_RS14505 are separated by 48 nucleotidesHMPREF1058_RS14505 and HMPREF1058_RS14500 are separated by 95 nucleotides HMPREF1058_RS14515: HMPREF1058_RS14515 - AAA family ATPase, at 1,182,257 to 1,184,257 _RS14515 HMPREF1058_RS14510: HMPREF1058_RS14510 - threonylcarbamoyl-AMP synthase, at 1,184,264 to 1,184,878 _RS14510 HMPREF1058_RS14505: HMPREF1058_RS14505 - mechanosensitive ion channel, at 1,184,927 to 1,185,760 _RS14505 HMPREF1058_RS14500: HMPREF1058_RS14500 - FprA family A-type flavoprotein, at 1,185,856 to 1,187,043 _RS14500 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1183.938 kb on - strand, within HMPREF1058_RS14515at 1183.938 kb on - strand, within HMPREF1058_RS14515at 1183.938 kb on - strand, within HMPREF1058_RS14515at 1183.940 kb on - strand, within HMPREF1058_RS14515at 1183.940 kb on - strandat 1183.957 kb on + strand, within HMPREF1058_RS14515at 1183.958 kb on - strand, within HMPREF1058_RS14515at 1183.964 kb on - strand, within HMPREF1058_RS14515at 1183.972 kb on - strand, within HMPREF1058_RS14515at 1183.972 kb on - strand, within HMPREF1058_RS14515at 1183.989 kb on - strand, within HMPREF1058_RS14515at 1184.050 kb on + strand, within HMPREF1058_RS14515at 1184.087 kb on - strandat 1184.091 kb on + strandat 1184.092 kb on - strandat 1184.092 kb on - strandat 1184.284 kb on + strandat 1184.291 kb on - strandat 1184.347 kb on + strand, within HMPREF1058_RS14510at 1184.347 kb on + strand, within HMPREF1058_RS14510at 1184.348 kb on - strand, within HMPREF1058_RS14510at 1184.351 kb on + strand, within HMPREF1058_RS14510at 1184.369 kb on + strand, within HMPREF1058_RS14510at 1184.369 kb on + strand, within HMPREF1058_RS14510at 1184.370 kb on - strand, within HMPREF1058_RS14510at 1184.413 kb on + strand, within HMPREF1058_RS14510at 1184.475 kb on + strand, within HMPREF1058_RS14510at 1184.482 kb on + strand, within HMPREF1058_RS14510at 1184.611 kb on - strand, within HMPREF1058_RS14510at 1184.614 kb on + strand, within HMPREF1058_RS14510at 1184.616 kb on + strand, within HMPREF1058_RS14510at 1184.616 kb on + strand, within HMPREF1058_RS14510at 1184.616 kb on + strand, within HMPREF1058_RS14510at 1184.616 kb on + strand, within HMPREF1058_RS14510at 1184.617 kb on - strand, within HMPREF1058_RS14510at 1184.658 kb on + strand, within HMPREF1058_RS14510at 1184.661 kb on + strand, within HMPREF1058_RS14510at 1184.662 kb on - strand, within HMPREF1058_RS14510at 1184.662 kb on - strand, within HMPREF1058_RS14510at 1184.713 kb on - strand, within HMPREF1058_RS14510at 1184.717 kb on + strand, within HMPREF1058_RS14510at 1184.718 kb on - strand, within HMPREF1058_RS14510at 1184.718 kb on - strand, within HMPREF1058_RS14510at 1184.718 kb on - strand, within HMPREF1058_RS14510at 1184.718 kb on - strand, within HMPREF1058_RS14510at 1184.718 kb on - strand, within HMPREF1058_RS14510at 1184.719 kb on + strand, within HMPREF1058_RS14510at 1184.720 kb on - strand, within HMPREF1058_RS14510at 1184.796 kb on + strand, within HMPREF1058_RS14510at 1184.796 kb on + strand, within HMPREF1058_RS14510at 1184.796 kb on + strand, within HMPREF1058_RS14510at 1184.796 kb on + strand, within HMPREF1058_RS14510at 1184.797 kb on - strand, within HMPREF1058_RS14510at 1184.807 kb on - strand, within HMPREF1058_RS14510at 1184.807 kb on - strand, within HMPREF1058_RS14510at 1184.892 kb on - strandat 1184.899 kb on - strandat 1184.899 kb on - strandat 1184.917 kb on + strandat 1184.934 kb on + strandat 1185.000 kb on + strandat 1185.054 kb on + strand, within HMPREF1058_RS14505at 1185.264 kb on + strand, within HMPREF1058_RS14505at 1185.289 kb on + strand, within HMPREF1058_RS14505at 1185.289 kb on + strand, within HMPREF1058_RS14505at 1185.412 kb on - strand, within HMPREF1058_RS14505at 1185.413 kb on + strand, within HMPREF1058_RS14505at 1185.414 kb on - strand, within HMPREF1058_RS14505at 1185.414 kb on - strand, within HMPREF1058_RS14505at 1185.480 kb on + strand, within HMPREF1058_RS14505at 1185.480 kb on + strand, within HMPREF1058_RS14505at 1185.504 kb on - strand, within HMPREF1058_RS14505at 1185.517 kb on + strand, within HMPREF1058_RS14505at 1185.520 kb on + strand, within HMPREF1058_RS14505at 1185.520 kb on + strand, within HMPREF1058_RS14505at 1185.559 kb on + strand, within HMPREF1058_RS14505at 1185.566 kb on - strand, within HMPREF1058_RS14505at 1185.621 kb on + strand, within HMPREF1058_RS14505at 1185.621 kb on + strand, within HMPREF1058_RS14505at 1185.625 kb on + strand, within HMPREF1058_RS14505at 1185.748 kb on - strandat 1185.841 kb on - strandat 1185.937 kb on - strandat 1185.937 kb on - strandat 1186.026 kb on + strand, within HMPREF1058_RS14500at 1186.026 kb on + strand, within HMPREF1058_RS14500at 1186.027 kb on - strand, within HMPREF1058_RS14500at 1186.027 kb on - strand, within HMPREF1058_RS14500at 1186.027 kb on - strand, within HMPREF1058_RS14500at 1186.027 kb on - strand, within HMPREF1058_RS14500at 1186.049 kb on + strand, within HMPREF1058_RS14500at 1186.060 kb on + strand, within HMPREF1058_RS14500at 1186.060 kb on + strand, within HMPREF1058_RS14500at 1186.120 kb on - strand, within HMPREF1058_RS14500at 1186.149 kb on + strand, within HMPREF1058_RS14500at 1186.171 kb on - strand, within HMPREF1058_RS14500at 1186.200 kb on + strand, within HMPREF1058_RS14500at 1186.215 kb on + strand, within HMPREF1058_RS14500at 1186.249 kb on - strand, within HMPREF1058_RS14500at 1186.249 kb on - strand, within HMPREF1058_RS14500at 1186.269 kb on + strand, within HMPREF1058_RS14500at 1186.272 kb on + strand, within HMPREF1058_RS14500at 1186.273 kb on - strand, within HMPREF1058_RS14500at 1186.277 kb on + strand, within HMPREF1058_RS14500at 1186.278 kb on - strand, within HMPREF1058_RS14500at 1186.278 kb on - strand, within HMPREF1058_RS14500at 1186.297 kb on + strand, within HMPREF1058_RS14500at 1186.297 kb on + strand, within HMPREF1058_RS14500at 1186.338 kb on - strand, within HMPREF1058_RS14500at 1186.386 kb on + strand, within HMPREF1058_RS14500at 1186.468 kb on - strand, within HMPREF1058_RS14500at 1186.473 kb on - strand, within HMPREF1058_RS14500at 1186.512 kb on + strand, within HMPREF1058_RS14500at 1186.513 kb on - strandat 1186.650 kb on + strand, within HMPREF1058_RS14500at 1186.651 kb on - strand, within HMPREF1058_RS14500at 1186.706 kb on - strand, within HMPREF1058_RS14500at 1186.713 kb on - strand, within HMPREF1058_RS14500

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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1,183,938 - HMPREF1058_RS14515 0.84 +0.6
1,183,938 - HMPREF1058_RS14515 0.84 -0.8
1,183,938 - HMPREF1058_RS14515 0.84 +0.7
1,183,940 - HMPREF1058_RS14515 0.84 +0.2
1,183,940 - -1.8
1,183,957 + HMPREF1058_RS14515 0.85 +0.2
1,183,958 - HMPREF1058_RS14515 0.85 -0.2
1,183,964 - HMPREF1058_RS14515 0.85 +0.1
1,183,972 - HMPREF1058_RS14515 0.86 +0.8
1,183,972 - HMPREF1058_RS14515 0.86 +0.0
1,183,989 - HMPREF1058_RS14515 0.87 -0.9
1,184,050 + HMPREF1058_RS14515 0.90 +0.2
1,184,087 - +0.6
1,184,091 + +0.4
1,184,092 - +1.5
1,184,092 - -0.1
1,184,284 + -0.1
1,184,291 - -0.0
1,184,347 + HMPREF1058_RS14510 0.13 -0.4
1,184,347 + HMPREF1058_RS14510 0.13 -0.0
1,184,348 - HMPREF1058_RS14510 0.14 -0.7
1,184,351 + HMPREF1058_RS14510 0.14 -0.5
1,184,369 + HMPREF1058_RS14510 0.17 +0.0
1,184,369 + HMPREF1058_RS14510 0.17 +1.7
1,184,370 - HMPREF1058_RS14510 0.17 -0.8
1,184,413 + HMPREF1058_RS14510 0.24 -0.1
1,184,475 + HMPREF1058_RS14510 0.34 +1.0
1,184,482 + HMPREF1058_RS14510 0.35 -1.5
1,184,611 - HMPREF1058_RS14510 0.56 +0.0
1,184,614 + HMPREF1058_RS14510 0.57 -1.2
1,184,616 + HMPREF1058_RS14510 0.57 +0.0
1,184,616 + HMPREF1058_RS14510 0.57 +0.4
1,184,616 + HMPREF1058_RS14510 0.57 -0.0
1,184,616 + HMPREF1058_RS14510 0.57 -1.0
1,184,617 - HMPREF1058_RS14510 0.57 -1.4
1,184,658 + HMPREF1058_RS14510 0.64 +0.3
1,184,661 + HMPREF1058_RS14510 0.65 -0.9
1,184,662 - HMPREF1058_RS14510 0.65 +0.8
1,184,662 - HMPREF1058_RS14510 0.65 +0.2
1,184,713 - HMPREF1058_RS14510 0.73 +0.6
1,184,717 + HMPREF1058_RS14510 0.74 +0.3
1,184,718 - HMPREF1058_RS14510 0.74 -0.5
1,184,718 - HMPREF1058_RS14510 0.74 +0.0
1,184,718 - HMPREF1058_RS14510 0.74 +1.2
1,184,718 - HMPREF1058_RS14510 0.74 -1.5
1,184,718 - HMPREF1058_RS14510 0.74 -0.8
1,184,719 + HMPREF1058_RS14510 0.74 -0.2
1,184,720 - HMPREF1058_RS14510 0.74 -0.2
1,184,796 + HMPREF1058_RS14510 0.87 +0.4
1,184,796 + HMPREF1058_RS14510 0.87 +0.5
1,184,796 + HMPREF1058_RS14510 0.87 +0.6
1,184,796 + HMPREF1058_RS14510 0.87 +0.5
1,184,797 - HMPREF1058_RS14510 0.87 +0.3
1,184,807 - HMPREF1058_RS14510 0.88 -0.3
1,184,807 - HMPREF1058_RS14510 0.88 -1.7
1,184,892 - +1.3
1,184,899 - +2.9
1,184,899 - +0.3
1,184,917 + -1.7
1,184,934 + -1.3
1,185,000 + +1.2
1,185,054 + HMPREF1058_RS14505 0.15 +0.9
1,185,264 + HMPREF1058_RS14505 0.40 -0.2
1,185,289 + HMPREF1058_RS14505 0.43 -1.4
1,185,289 + HMPREF1058_RS14505 0.43 +0.9
1,185,412 - HMPREF1058_RS14505 0.58 -1.3
1,185,413 + HMPREF1058_RS14505 0.58 +0.5
1,185,414 - HMPREF1058_RS14505 0.58 +1.9
1,185,414 - HMPREF1058_RS14505 0.58 -1.4
1,185,480 + HMPREF1058_RS14505 0.66 -1.1
1,185,480 + HMPREF1058_RS14505 0.66 -0.4
1,185,504 - HMPREF1058_RS14505 0.69 +0.5
1,185,517 + HMPREF1058_RS14505 0.71 -0.9
1,185,520 + HMPREF1058_RS14505 0.71 -0.4
1,185,520 + HMPREF1058_RS14505 0.71 -0.1
1,185,559 + HMPREF1058_RS14505 0.76 -2.4
1,185,566 - HMPREF1058_RS14505 0.77 -0.6
1,185,621 + HMPREF1058_RS14505 0.83 -0.4
1,185,621 + HMPREF1058_RS14505 0.83 -1.5
1,185,625 + HMPREF1058_RS14505 0.84 -0.3
1,185,748 - +2.1
1,185,841 - +0.1
1,185,937 - +0.3
1,185,937 - +0.6
1,186,026 + HMPREF1058_RS14500 0.14 -0.8
1,186,026 + HMPREF1058_RS14500 0.14 +0.9
1,186,027 - HMPREF1058_RS14500 0.14 -2.1
1,186,027 - HMPREF1058_RS14500 0.14 -0.3
1,186,027 - HMPREF1058_RS14500 0.14 -2.7
1,186,027 - HMPREF1058_RS14500 0.14 +0.8
1,186,049 + HMPREF1058_RS14500 0.16 -0.0
1,186,060 + HMPREF1058_RS14500 0.17 +0.4
1,186,060 + HMPREF1058_RS14500 0.17 +0.0
1,186,120 - HMPREF1058_RS14500 0.22 +0.7
1,186,149 + HMPREF1058_RS14500 0.25 +0.3
1,186,171 - HMPREF1058_RS14500 0.27 +0.9
1,186,200 + HMPREF1058_RS14500 0.29 -1.2
1,186,215 + HMPREF1058_RS14500 0.30 +0.3
1,186,249 - HMPREF1058_RS14500 0.33 -0.1
1,186,249 - HMPREF1058_RS14500 0.33 -0.5
1,186,269 + HMPREF1058_RS14500 0.35 -1.7
1,186,272 + HMPREF1058_RS14500 0.35 -0.2
1,186,273 - HMPREF1058_RS14500 0.35 +1.1
1,186,277 + HMPREF1058_RS14500 0.35 -0.8
1,186,278 - HMPREF1058_RS14500 0.36 +0.1
1,186,278 - HMPREF1058_RS14500 0.36 +0.4
1,186,297 + HMPREF1058_RS14500 0.37 +0.2
1,186,297 + HMPREF1058_RS14500 0.37 +0.6
1,186,338 - HMPREF1058_RS14500 0.41 -0.4
1,186,386 + HMPREF1058_RS14500 0.45 +0.6
1,186,468 - HMPREF1058_RS14500 0.52 +0.3
1,186,473 - HMPREF1058_RS14500 0.52 -0.7
1,186,512 + HMPREF1058_RS14500 0.55 -0.6
1,186,513 - -2.0
1,186,650 + HMPREF1058_RS14500 0.67 -0.6
1,186,651 - HMPREF1058_RS14500 0.67 -1.5
1,186,706 - HMPREF1058_RS14500 0.72 +0.3
1,186,713 - HMPREF1058_RS14500 0.72 +1.4

Or see this region's nucleotide sequence