Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14490

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,187,133	-				-0.2
1,187,172	+		HMPREF1058_RS14495	0.12	+0.3
1,187,224	+		HMPREF1058_RS14495	0.18	-0.9
1,187,226	+		HMPREF1058_RS14495	0.18	+1.9
1,187,229	-		HMPREF1058_RS14495	0.18	-0.4
1,187,262	+		HMPREF1058_RS14495	0.22	-0.0
1,187,264	+		HMPREF1058_RS14495	0.22	-0.9
1,187,265	-		HMPREF1058_RS14495	0.22	+0.3
1,187,322	+		HMPREF1058_RS14495	0.28	+0.5
1,187,323	-		HMPREF1058_RS14495	0.28	-1.0
1,187,428	-		HMPREF1058_RS14495	0.40	-0.9
1,187,440	+		HMPREF1058_RS14495	0.41	-0.4
1,187,494	-		HMPREF1058_RS14495	0.47	-0.4
1,187,494	-		HMPREF1058_RS14495	0.47	-1.1
1,187,588	+		HMPREF1058_RS14495	0.57	-0.2
1,187,610	+		HMPREF1058_RS14495	0.59	+0.5
1,187,611	-		HMPREF1058_RS14495	0.60	-0.4
1,187,703	-		HMPREF1058_RS14495	0.69	-1.3
1,187,706	+		HMPREF1058_RS14495	0.70	-0.4
1,187,707	-		HMPREF1058_RS14495	0.70	+1.0
1,187,714	+		HMPREF1058_RS14495	0.71	+0.7
1,187,842	-		HMPREF1058_RS14495	0.84	+0.2
1,187,846	+		HMPREF1058_RS14495	0.85	-0.8
1,187,846	+		HMPREF1058_RS14495	0.85	-1.1
1,187,941	-				-0.6
1,187,945	-				-1.9
1,187,956	+				-0.3
1,187,966	+				+0.3
1,187,967	-				-0.0
1,187,991	+				-1.0
1,188,048	+				+0.1
1,188,055	+				+0.6
1,188,065	-				-2.5
1,188,072	-				+1.6
1,188,086	+				-0.9
1,188,137	-				-0.4
1,188,216	+				+0.6
1,188,317	+		HMPREF1058_RS14490	0.11	-3.0
1,188,340	-		HMPREF1058_RS14490	0.12	-1.8
1,188,342	-		HMPREF1058_RS14490	0.12	-0.8
1,188,342	-		HMPREF1058_RS14490	0.12	-0.4
1,188,342	-		HMPREF1058_RS14490	0.12	+1.9
1,188,371	-		HMPREF1058_RS14490	0.14	-0.4
1,188,393	-		HMPREF1058_RS14490	0.15	-0.8
1,188,393	-		HMPREF1058_RS14490	0.15	+1.8
1,188,533	+		HMPREF1058_RS14490	0.21	-1.4
1,188,533	+		HMPREF1058_RS14490	0.21	-0.8
1,188,617	+		HMPREF1058_RS14490	0.25	-0.7
1,188,618	-		HMPREF1058_RS14490	0.25	-1.9
1,188,721	+		HMPREF1058_RS14490	0.29	-0.9
1,188,722	-		HMPREF1058_RS14490	0.30	-0.7
1,188,726	-		HMPREF1058_RS14490	0.30	-0.5
1,188,729	+		HMPREF1058_RS14490	0.30	+1.9
1,188,729	+		HMPREF1058_RS14490	0.30	-1.8
1,188,745	-		HMPREF1058_RS14490	0.31	-1.7
1,188,752	+		HMPREF1058_RS14490	0.31	+0.9
1,188,796	-		HMPREF1058_RS14490	0.33	+0.9
1,188,802	-		HMPREF1058_RS14490	0.33	-2.2
1,189,034	-		HMPREF1058_RS14490	0.44	-1.6
1,189,054	-		HMPREF1058_RS14490	0.45	-2.2
1,189,131	-		HMPREF1058_RS14490	0.48	-0.5
1,189,141	-		HMPREF1058_RS14490	0.49	-0.7
1,189,259	+		HMPREF1058_RS14490	0.54	-1.1
1,189,260	-		HMPREF1058_RS14490	0.54	-1.9
1,189,260	-		HMPREF1058_RS14490	0.54	-1.5
1,189,260	-		HMPREF1058_RS14490	0.54	-1.1
1,189,281	+		HMPREF1058_RS14490	0.55	-1.4
1,189,315	+		HMPREF1058_RS14490	0.56	-1.4
1,189,358	+		HMPREF1058_RS14490	0.58	-2.1
1,189,358	+		HMPREF1058_RS14490	0.58	-1.0
1,189,368	+		HMPREF1058_RS14490	0.59	-1.0
1,189,369	-		HMPREF1058_RS14490	0.59	-1.4
1,189,457	+		HMPREF1058_RS14490	0.63	-3.2
1,189,457	+		HMPREF1058_RS14490	0.63	-1.5
1,189,587	+		HMPREF1058_RS14490	0.69	-1.1
1,189,609	-		HMPREF1058_RS14490	0.70	-2.5
1,189,609	-				+1.9
1,189,610	+		HMPREF1058_RS14490	0.70	-0.9
1,189,611	-		HMPREF1058_RS14490	0.70	-0.4
1,189,611	-		HMPREF1058_RS14490	0.70	+0.0
1,189,686	+		HMPREF1058_RS14490	0.73	-0.7
1,189,686	+		HMPREF1058_RS14490	0.73	-2.1
1,189,687	-		HMPREF1058_RS14490	0.73	-2.2
1,189,808	-		HMPREF1058_RS14490	0.79	-0.8
1,189,829	+		HMPREF1058_RS14490	0.80	-0.9
1,189,839	+		HMPREF1058_RS14490	0.80	-1.7
1,189,843	+		HMPREF1058_RS14490	0.80	-1.1
1,189,844	-		HMPREF1058_RS14490	0.80	-1.5
1,189,887	+		HMPREF1058_RS14490	0.82	-0.3
1,189,892	+		HMPREF1058_RS14490	0.83	-0.8
1,189,892	+		HMPREF1058_RS14490	0.83	-0.8
1,189,893	-		HMPREF1058_RS14490	0.83	-1.0
1,189,897	+		HMPREF1058_RS14490	0.83	+0.9
1,189,898	-		HMPREF1058_RS14490	0.83	-2.7
1,189,939	+		HMPREF1058_RS14490	0.85	-2.6
1,189,956	-		HMPREF1058_RS14490	0.86	+0.7
1,189,984	-		HMPREF1058_RS14490	0.87	-0.7
1,189,985	+		HMPREF1058_RS14490	0.87	-1.4
1,189,986	-		HMPREF1058_RS14490	0.87	-2.1
1,190,116	+				-1.6
1,190,150	-				-0.9
1,190,181	+				-1.4
1,190,181	+				-1.3
1,190,184	-				-2.6
1,190,231	-				-3.5
1,190,303	+				+0.1
1,190,354	+				-1.1
1,190,357	-				-0.9
1,190,366	-				+0.0
1,190,432	-				+0.0
1,190,432	-				+0.4
1,190,446	+				+0.6
1,190,451	+				-0.7
1,190,451	+				-0.3
1,190,467	-		HMPREF1058_RS14485	0.11	+0.5
1,190,467	-		HMPREF1058_RS14485	0.11	+0.3
1,190,473	+		HMPREF1058_RS14485	0.12	+1.1
1,190,473	+		HMPREF1058_RS14485	0.12	-0.4
1,190,474	-		HMPREF1058_RS14485	0.12	-0.2
1,190,497	+		HMPREF1058_RS14485	0.15	+1.4
1,190,497	+		HMPREF1058_RS14485	0.15	-0.5
1,190,524	+		HMPREF1058_RS14485	0.18	-2.1
1,190,525	-		HMPREF1058_RS14485	0.18	-0.7
1,190,541	+		HMPREF1058_RS14485	0.20	-0.5
1,190,542	-		HMPREF1058_RS14485	0.20	+0.5
1,190,675	-		HMPREF1058_RS14485	0.35	-0.4
1,190,942	-		HMPREF1058_RS14485	0.67	+0.1
1,191,000	+		HMPREF1058_RS14485	0.73	-0.4
1,191,042	+		HMPREF1058_RS14485	0.78	-0.8
1,191,047	-		HMPREF1058_RS14485	0.79	-0.1
1,191,047	-		HMPREF1058_RS14485	0.79	+0.3
1,191,049	+		HMPREF1058_RS14485	0.79	+0.1
1,191,063	+		HMPREF1058_RS14485	0.81	+1.2
1,191,064	-		HMPREF1058_RS14485	0.81	+0.3
1,191,099	-		HMPREF1058_RS14485	0.85	-0.3
1,191,100	+		HMPREF1058_RS14485	0.85	-1.9
1,191,100	+		HMPREF1058_RS14485	0.85	+1.5
1,191,103	+		HMPREF1058_RS14485	0.85	+0.1
1,191,128	-		HMPREF1058_RS14485	0.88	-0.5
1,191,128	-		HMPREF1058_RS14485	0.88	-0.4
1,191,209	-				+0.8
1,191,209	-				+0.3