Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14035

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14040 and HMPREF1058_RS14035 are separated by 97 nucleotidesHMPREF1058_RS14035 and HMPREF1058_RS14030 are separated by 2 nucleotidesHMPREF1058_RS14030 and HMPREF1058_RS14025 overlap by 10 nucleotides HMPREF1058_RS14040: HMPREF1058_RS14040 - AAA family ATPase, at 1,301,619 to 1,303,037 _RS14040 HMPREF1058_RS14035: HMPREF1058_RS14035 - hypothetical protein, at 1,303,135 to 1,303,821 _RS14035 HMPREF1058_RS14030: HMPREF1058_RS14030 - DUF3822 family protein, at 1,303,824 to 1,304,648 _RS14030 HMPREF1058_RS14025: HMPREF1058_RS14025 - RsmD family RNA methyltransferase, at 1,304,639 to 1,305,199 _RS14025 Position (kb) 1303 1304Strain fitness (log2 ratio) -1 0 1at 1302.210 kb on - strand, within HMPREF1058_RS14040at 1302.454 kb on + strand, within HMPREF1058_RS14040at 1302.456 kb on + strand, within HMPREF1058_RS14040at 1302.483 kb on - strand, within HMPREF1058_RS14040at 1302.574 kb on + strand, within HMPREF1058_RS14040at 1302.574 kb on + strand, within HMPREF1058_RS14040at 1302.574 kb on + strand, within HMPREF1058_RS14040at 1302.577 kb on - strand, within HMPREF1058_RS14040at 1302.577 kb on - strand, within HMPREF1058_RS14040at 1302.580 kb on + strand, within HMPREF1058_RS14040at 1302.678 kb on - strand, within HMPREF1058_RS14040at 1302.678 kb on - strand, within HMPREF1058_RS14040at 1302.753 kb on - strand, within HMPREF1058_RS14040at 1302.759 kb on - strand, within HMPREF1058_RS14040at 1302.761 kb on + strand, within HMPREF1058_RS14040at 1302.761 kb on + strand, within HMPREF1058_RS14040at 1302.763 kb on + strand, within HMPREF1058_RS14040at 1302.781 kb on + strand, within HMPREF1058_RS14040at 1303.029 kb on - strandat 1303.109 kb on + strandat 1303.127 kb on + strandat 1303.149 kb on + strandat 1303.186 kb on + strandat 1303.545 kb on + strand, within HMPREF1058_RS14035at 1303.545 kb on + strand, within HMPREF1058_RS14035at 1303.546 kb on - strand, within HMPREF1058_RS14035at 1303.552 kb on + strandat 1303.585 kb on + strand, within HMPREF1058_RS14035at 1303.925 kb on + strand, within HMPREF1058_RS14030at 1303.992 kb on - strand, within HMPREF1058_RS14030at 1304.000 kb on + strand, within HMPREF1058_RS14030at 1304.001 kb on - strand, within HMPREF1058_RS14030at 1304.106 kb on - strand, within HMPREF1058_RS14030at 1304.120 kb on + strand, within HMPREF1058_RS14030at 1304.191 kb on + strand, within HMPREF1058_RS14030at 1304.243 kb on + strand, within HMPREF1058_RS14030at 1304.325 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.331 kb on + strand, within HMPREF1058_RS14030at 1304.332 kb on - strand, within HMPREF1058_RS14030at 1304.332 kb on - strand, within HMPREF1058_RS14030at 1304.380 kb on + strand, within HMPREF1058_RS14030at 1304.380 kb on + strand, within HMPREF1058_RS14030at 1304.434 kb on + strand, within HMPREF1058_RS14030at 1304.437 kb on + strand, within HMPREF1058_RS14030at 1304.438 kb on - strand, within HMPREF1058_RS14030at 1304.439 kb on + strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.440 kb on - strand, within HMPREF1058_RS14030at 1304.443 kb on + strand, within HMPREF1058_RS14030at 1304.443 kb on + strand, within HMPREF1058_RS14030at 1304.444 kb on - strand, within HMPREF1058_RS14030at 1304.456 kb on - strand, within HMPREF1058_RS14030at 1304.501 kb on - strand, within HMPREF1058_RS14030at 1304.594 kb on - strandat 1304.633 kb on - strandat 1304.635 kb on + strandat 1304.636 kb on - strandat 1304.656 kb on + strandat 1304.659 kb on - strandat 1304.661 kb on - strandat 1304.745 kb on + strand, within HMPREF1058_RS14025at 1304.745 kb on + strand, within HMPREF1058_RS14025at 1304.746 kb on - strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025at 1304.820 kb on + strand, within HMPREF1058_RS14025

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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1,302,210 - HMPREF1058_RS14040 0.42 -0.0
1,302,454 + HMPREF1058_RS14040 0.59 +1.4
1,302,456 + HMPREF1058_RS14040 0.59 -0.3
1,302,483 - HMPREF1058_RS14040 0.61 -1.3
1,302,574 + HMPREF1058_RS14040 0.67 -1.2
1,302,574 + HMPREF1058_RS14040 0.67 -0.2
1,302,574 + HMPREF1058_RS14040 0.67 -0.3
1,302,577 - HMPREF1058_RS14040 0.68 -0.3
1,302,577 - HMPREF1058_RS14040 0.68 -1.2
1,302,580 + HMPREF1058_RS14040 0.68 +0.1
1,302,678 - HMPREF1058_RS14040 0.75 +0.9
1,302,678 - HMPREF1058_RS14040 0.75 -0.1
1,302,753 - HMPREF1058_RS14040 0.80 -0.2
1,302,759 - HMPREF1058_RS14040 0.80 -0.4
1,302,761 + HMPREF1058_RS14040 0.80 -0.1
1,302,761 + HMPREF1058_RS14040 0.80 -0.5
1,302,763 + HMPREF1058_RS14040 0.81 -0.2
1,302,781 + HMPREF1058_RS14040 0.82 +0.7
1,303,029 - +1.2
1,303,109 + +0.6
1,303,127 + -0.7
1,303,149 + -0.7
1,303,186 + -0.4
1,303,545 + HMPREF1058_RS14035 0.60 -0.6
1,303,545 + HMPREF1058_RS14035 0.60 -1.4
1,303,546 - HMPREF1058_RS14035 0.60 +0.3
1,303,552 + -0.1
1,303,585 + HMPREF1058_RS14035 0.66 -1.1
1,303,925 + HMPREF1058_RS14030 0.12 -0.5
1,303,992 - HMPREF1058_RS14030 0.20 -0.9
1,304,000 + HMPREF1058_RS14030 0.21 -0.1
1,304,001 - HMPREF1058_RS14030 0.21 -0.2
1,304,106 - HMPREF1058_RS14030 0.34 +0.9
1,304,120 + HMPREF1058_RS14030 0.36 +0.8
1,304,191 + HMPREF1058_RS14030 0.44 -0.2
1,304,243 + HMPREF1058_RS14030 0.51 +0.1
1,304,325 + HMPREF1058_RS14030 0.61 -1.2
1,304,331 + HMPREF1058_RS14030 0.61 -0.4
1,304,331 + HMPREF1058_RS14030 0.61 +0.6
1,304,331 + HMPREF1058_RS14030 0.61 +0.8
1,304,331 + HMPREF1058_RS14030 0.61 -0.8
1,304,332 - HMPREF1058_RS14030 0.62 +0.8
1,304,332 - HMPREF1058_RS14030 0.62 -1.0
1,304,380 + HMPREF1058_RS14030 0.67 +0.0
1,304,380 + HMPREF1058_RS14030 0.67 -0.2
1,304,434 + HMPREF1058_RS14030 0.74 -0.7
1,304,437 + HMPREF1058_RS14030 0.74 -0.5
1,304,438 - HMPREF1058_RS14030 0.74 -1.3
1,304,439 + HMPREF1058_RS14030 0.75 -0.7
1,304,440 - HMPREF1058_RS14030 0.75 +0.1
1,304,440 - HMPREF1058_RS14030 0.75 -0.5
1,304,440 - HMPREF1058_RS14030 0.75 -0.4
1,304,440 - HMPREF1058_RS14030 0.75 +0.1
1,304,443 + HMPREF1058_RS14030 0.75 +0.3
1,304,443 + HMPREF1058_RS14030 0.75 -0.4
1,304,444 - HMPREF1058_RS14030 0.75 -0.2
1,304,456 - HMPREF1058_RS14030 0.77 -1.2
1,304,501 - HMPREF1058_RS14030 0.82 +1.6
1,304,594 - -0.1
1,304,633 - -0.2
1,304,635 + -0.2
1,304,636 - -0.9
1,304,656 + +0.1
1,304,659 - -0.5
1,304,661 - -0.7
1,304,745 + HMPREF1058_RS14025 0.19 -0.4
1,304,745 + HMPREF1058_RS14025 0.19 -0.6
1,304,746 - HMPREF1058_RS14025 0.19 +0.9
1,304,820 + HMPREF1058_RS14025 0.32 +0.2
1,304,820 + HMPREF1058_RS14025 0.32 -0.4
1,304,820 + HMPREF1058_RS14025 0.32 +0.0

Or see this region's nucleotide sequence