Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14005

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,309,185	+		HMPREF1058_RS14015	0.86	+0.5
1,309,186	-		HMPREF1058_RS14015	0.86	+0.5
1,309,196	-		HMPREF1058_RS14015	0.86	+0.1
1,309,256	-				+0.9
1,309,343	+				+0.1
1,309,361	+				-0.2
1,309,365	+				+1.9
1,309,366	-				+0.3
1,309,387	+				-0.4
1,309,394	+				+1.8
1,309,395	-				-0.3
1,309,405	+				+0.3
1,309,432	+				-0.3
1,309,432	+				-0.3
1,309,451	+				-1.8
1,309,458	-				+0.2
1,309,483	+				-0.1
1,309,559	-				-0.1
1,309,562	+				-2.8
1,309,563	-				+0.6
1,309,578	-				-0.1
1,309,581	-				+1.4
1,309,749	-		HMPREF1058_RS14010	0.18	-0.4
1,309,749	-		HMPREF1058_RS14010	0.18	+1.4
1,309,753	+		HMPREF1058_RS14010	0.19	+1.4
1,309,754	-		HMPREF1058_RS14010	0.20	-0.4
1,309,793	+		HMPREF1058_RS14010	0.29	-0.1
1,309,793	+		HMPREF1058_RS14010	0.29	+1.3
1,309,794	-		HMPREF1058_RS14010	0.29	-0.6
1,309,794	-		HMPREF1058_RS14010	0.29	+0.3
1,309,795	+		HMPREF1058_RS14010	0.30	-0.1
1,309,796	-		HMPREF1058_RS14010	0.30	-0.2
1,309,813	+		HMPREF1058_RS14010	0.34	-0.0
1,309,813	+		HMPREF1058_RS14010	0.34	-2.3
1,309,820	+		HMPREF1058_RS14010	0.36	+0.1
1,309,821	-		HMPREF1058_RS14010	0.36	+0.4
1,309,823	+		HMPREF1058_RS14010	0.37	+0.9
1,309,843	-		HMPREF1058_RS14010	0.41	+0.8
1,309,854	+		HMPREF1058_RS14010	0.44	-0.1
1,309,917	+		HMPREF1058_RS14010	0.60	+0.2
1,309,935	+		HMPREF1058_RS14010	0.64	-0.6
1,309,936	-		HMPREF1058_RS14010	0.64	-0.0
1,309,940	-		HMPREF1058_RS14010	0.65	-0.2
1,309,960	-		HMPREF1058_RS14010	0.70	+0.6
1,309,971	+		HMPREF1058_RS14010	0.73	-0.6
1,309,996	-		HMPREF1058_RS14010	0.79	+0.9
1,310,039	+				+1.3
1,310,039	+				-0.4
1,310,167	-				-0.1
1,310,206	+				-1.9
1,310,345	+		HMPREF1058_RS14005	0.16	+1.9
1,310,347	+		HMPREF1058_RS14005	0.16	-0.4
1,310,347	+		HMPREF1058_RS14005	0.16	-2.1
1,310,349	+		HMPREF1058_RS14005	0.16	+0.3
1,310,390	+		HMPREF1058_RS14005	0.20	-0.1
1,310,414	-		HMPREF1058_RS14005	0.22	+1.9
1,310,465	-		HMPREF1058_RS14005	0.27	+2.9
1,310,516	-		HMPREF1058_RS14005	0.32	+0.3
1,310,521	+		HMPREF1058_RS14005	0.32	+1.9
1,310,677	-		HMPREF1058_RS14005	0.47	+0.3
1,310,766	+		HMPREF1058_RS14005	0.55	-1.7
1,310,771	+		HMPREF1058_RS14005	0.56	-1.2
1,310,822	-		HMPREF1058_RS14005	0.61	+0.9
1,310,822	-		HMPREF1058_RS14005	0.61	+1.9
1,310,931	+		HMPREF1058_RS14005	0.71	+1.9
1,310,932	-		HMPREF1058_RS14005	0.71	-1.5
1,311,012	+		HMPREF1058_RS14005	0.79	-0.1
1,311,012	+		HMPREF1058_RS14005	0.79	+0.3
1,311,144	+				-0.1
1,311,268	-				-0.4
1,311,307	+				-0.3
1,311,496	+				-1.2
1,311,509	+				-0.3
1,311,518	+				+0.2
1,311,519	-				+0.4
1,311,548	-				+0.5
1,311,550	-				-0.6
1,311,578	-				-0.5
1,311,615	-		HMPREF1058_RS14000	0.12	-0.0
1,311,616	+		HMPREF1058_RS14000	0.12	-1.1
1,311,623	-		HMPREF1058_RS14000	0.13	-0.2
1,311,624	+		HMPREF1058_RS14000	0.13	+0.9
1,311,625	-		HMPREF1058_RS14000	0.13	-2.3
1,311,625	-		HMPREF1058_RS14000	0.13	-0.4
1,311,625	-		HMPREF1058_RS14000	0.13	-1.9
1,311,631	+		HMPREF1058_RS14000	0.14	-0.2
1,311,643	+		HMPREF1058_RS14000	0.15	+0.5
1,311,645	+		HMPREF1058_RS14000	0.15	+0.1
1,311,646	-		HMPREF1058_RS14000	0.16	-0.9
1,311,646	-		HMPREF1058_RS14000	0.16	-0.3
1,311,658	+				+0.3
1,311,664	-		HMPREF1058_RS14000	0.18	+0.6
1,311,684	-		HMPREF1058_RS14000	0.20	+0.9
1,311,685	+		HMPREF1058_RS14000	0.20	+0.2
1,311,686	-		HMPREF1058_RS14000	0.20	+0.1
1,311,689	-		HMPREF1058_RS14000	0.21	-0.6
1,311,690	+		HMPREF1058_RS14000	0.21	+0.4
1,311,690	+		HMPREF1058_RS14000	0.21	+1.0
1,311,691	-		HMPREF1058_RS14000	0.21	-0.1
1,311,798	-		HMPREF1058_RS14000	0.33	+0.1
1,311,804	+		HMPREF1058_RS14000	0.34	-0.5
1,311,894	-		HMPREF1058_RS14000	0.44	+0.1
1,311,905	+		HMPREF1058_RS14000	0.46	+0.9
1,311,906	-		HMPREF1058_RS14000	0.46	-1.4
1,311,906	-		HMPREF1058_RS14000	0.46	+0.2
1,311,915	+		HMPREF1058_RS14000	0.47	-0.2
1,311,966	+		HMPREF1058_RS14000	0.53	-2.0
1,311,966	+		HMPREF1058_RS14000	0.53	+1.2
1,311,967	-		HMPREF1058_RS14000	0.53	-0.1
1,311,967	-		HMPREF1058_RS14000	0.53	-0.1
1,311,982	+		HMPREF1058_RS14000	0.55	-0.1
1,311,984	+		HMPREF1058_RS14000	0.55	-0.6
1,311,996	+		HMPREF1058_RS14000	0.56	+0.2
1,311,996	+		HMPREF1058_RS14000	0.56	+1.3
1,311,997	-		HMPREF1058_RS14000	0.56	-0.1
1,312,016	+		HMPREF1058_RS14000	0.59	+0.1
1,312,027	+		HMPREF1058_RS14000	0.60	+1.8
1,312,028	-		HMPREF1058_RS14000	0.60	+0.0
1,312,036	+		HMPREF1058_RS14000	0.61	-0.4
1,312,077	-		HMPREF1058_RS14000	0.66	-0.8
1,312,098	-		HMPREF1058_RS14000	0.68	+0.1
1,312,108	+		HMPREF1058_RS14000	0.69	+0.6
1,312,154	+		HMPREF1058_RS14000	0.75	-0.3
1,312,155	-		HMPREF1058_RS14000	0.75	-0.7
1,312,167	+		HMPREF1058_RS14000	0.76	-0.8
1,312,230	+		HMPREF1058_RS14000	0.83	-0.0