Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14015 and HMPREF1058_RS14010 are separated by 80 nucleotides HMPREF1058_RS14010 and HMPREF1058_RS14005 are separated by 97 nucleotides HMPREF1058_RS14005 and HMPREF1058_RS14000 are separated by 273 nucleotides
HMPREF1058_RS14015: HMPREF1058_RS14015 - TonB-dependent receptor, at 1,306,697 to 1,309,594
_RS14015
HMPREF1058_RS14010: HMPREF1058_RS14010 - hypothetical protein, at 1,309,675 to 1,310,079
_RS14010
HMPREF1058_RS14005: HMPREF1058_RS14005 - 3-dehydroquinate synthase, at 1,310,177 to 1,311,238
_RS14005
HMPREF1058_RS14000: HMPREF1058_RS14000 - helix-turn-helix domain-containing protein, at 1,311,512 to 1,312,372
_RS14000
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1309.185 kb on + strand, within HMPREF1058_RS14015 at 1309.186 kb on - strand, within HMPREF1058_RS14015 at 1309.196 kb on - strand, within HMPREF1058_RS14015 at 1309.256 kb on - strand at 1309.343 kb on + strand at 1309.361 kb on + strand at 1309.365 kb on + strand at 1309.366 kb on - strand at 1309.387 kb on + strand at 1309.394 kb on + strand at 1309.395 kb on - strand at 1309.405 kb on + strand at 1309.432 kb on + strand at 1309.432 kb on + strand at 1309.451 kb on + strand at 1309.458 kb on - strand at 1309.483 kb on + strand at 1309.559 kb on - strand at 1309.562 kb on + strand at 1309.563 kb on - strand at 1309.578 kb on - strand at 1309.581 kb on - strand at 1309.749 kb on - strand, within HMPREF1058_RS14010 at 1309.749 kb on - strand, within HMPREF1058_RS14010 at 1309.753 kb on + strand, within HMPREF1058_RS14010 at 1309.754 kb on - strand, within HMPREF1058_RS14010 at 1309.793 kb on + strand, within HMPREF1058_RS14010 at 1309.793 kb on + strand, within HMPREF1058_RS14010 at 1309.794 kb on - strand, within HMPREF1058_RS14010 at 1309.794 kb on - strand, within HMPREF1058_RS14010 at 1309.795 kb on + strand, within HMPREF1058_RS14010 at 1309.796 kb on - strand, within HMPREF1058_RS14010 at 1309.813 kb on + strand, within HMPREF1058_RS14010 at 1309.813 kb on + strand, within HMPREF1058_RS14010 at 1309.820 kb on + strand, within HMPREF1058_RS14010 at 1309.821 kb on - strand, within HMPREF1058_RS14010 at 1309.823 kb on + strand, within HMPREF1058_RS14010 at 1309.843 kb on - strand, within HMPREF1058_RS14010 at 1309.854 kb on + strand, within HMPREF1058_RS14010 at 1309.917 kb on + strand, within HMPREF1058_RS14010 at 1309.935 kb on + strand, within HMPREF1058_RS14010 at 1309.936 kb on - strand, within HMPREF1058_RS14010 at 1309.940 kb on - strand, within HMPREF1058_RS14010 at 1309.960 kb on - strand, within HMPREF1058_RS14010 at 1309.971 kb on + strand, within HMPREF1058_RS14010 at 1309.996 kb on - strand, within HMPREF1058_RS14010 at 1310.039 kb on + strand at 1310.039 kb on + strand at 1310.167 kb on - strand at 1310.206 kb on + strand at 1310.345 kb on + strand, within HMPREF1058_RS14005 at 1310.347 kb on + strand, within HMPREF1058_RS14005 at 1310.347 kb on + strand, within HMPREF1058_RS14005 at 1310.349 kb on + strand, within HMPREF1058_RS14005 at 1310.390 kb on + strand, within HMPREF1058_RS14005 at 1310.414 kb on - strand, within HMPREF1058_RS14005 at 1310.465 kb on - strand, within HMPREF1058_RS14005 at 1310.516 kb on - strand, within HMPREF1058_RS14005 at 1310.521 kb on + strand, within HMPREF1058_RS14005 at 1310.677 kb on - strand, within HMPREF1058_RS14005 at 1310.766 kb on + strand, within HMPREF1058_RS14005 at 1310.771 kb on + strand, within HMPREF1058_RS14005 at 1310.822 kb on - strand, within HMPREF1058_RS14005 at 1310.822 kb on - strand, within HMPREF1058_RS14005 at 1310.931 kb on + strand, within HMPREF1058_RS14005 at 1310.932 kb on - strand, within HMPREF1058_RS14005 at 1311.012 kb on + strand, within HMPREF1058_RS14005 at 1311.012 kb on + strand, within HMPREF1058_RS14005 at 1311.144 kb on + strand at 1311.268 kb on - strand at 1311.307 kb on + strand at 1311.496 kb on + strand at 1311.509 kb on + strand at 1311.518 kb on + strand at 1311.519 kb on - strand at 1311.548 kb on - strand at 1311.550 kb on - strand at 1311.578 kb on - strand at 1311.615 kb on - strand, within HMPREF1058_RS14000 at 1311.616 kb on + strand, within HMPREF1058_RS14000 at 1311.623 kb on - strand, within HMPREF1058_RS14000 at 1311.624 kb on + strand, within HMPREF1058_RS14000 at 1311.625 kb on - strand, within HMPREF1058_RS14000 at 1311.625 kb on - strand, within HMPREF1058_RS14000 at 1311.625 kb on - strand, within HMPREF1058_RS14000 at 1311.631 kb on + strand, within HMPREF1058_RS14000 at 1311.643 kb on + strand, within HMPREF1058_RS14000 at 1311.645 kb on + strand, within HMPREF1058_RS14000 at 1311.646 kb on - strand, within HMPREF1058_RS14000 at 1311.646 kb on - strand, within HMPREF1058_RS14000 at 1311.658 kb on + strand at 1311.664 kb on - strand, within HMPREF1058_RS14000 at 1311.684 kb on - strand, within HMPREF1058_RS14000 at 1311.685 kb on + strand, within HMPREF1058_RS14000 at 1311.686 kb on - strand, within HMPREF1058_RS14000 at 1311.689 kb on - strand, within HMPREF1058_RS14000 at 1311.690 kb on + strand, within HMPREF1058_RS14000 at 1311.690 kb on + strand, within HMPREF1058_RS14000 at 1311.691 kb on - strand, within HMPREF1058_RS14000 at 1311.798 kb on - strand, within HMPREF1058_RS14000 at 1311.804 kb on + strand, within HMPREF1058_RS14000 at 1311.894 kb on - strand, within HMPREF1058_RS14000 at 1311.905 kb on + strand, within HMPREF1058_RS14000 at 1311.906 kb on - strand, within HMPREF1058_RS14000 at 1311.906 kb on - strand, within HMPREF1058_RS14000 at 1311.915 kb on + strand, within HMPREF1058_RS14000 at 1311.966 kb on + strand, within HMPREF1058_RS14000 at 1311.966 kb on + strand, within HMPREF1058_RS14000 at 1311.967 kb on - strand, within HMPREF1058_RS14000 at 1311.967 kb on - strand, within HMPREF1058_RS14000 at 1311.982 kb on + strand, within HMPREF1058_RS14000 at 1311.984 kb on + strand, within HMPREF1058_RS14000 at 1311.996 kb on + strand, within HMPREF1058_RS14000 at 1311.996 kb on + strand, within HMPREF1058_RS14000 at 1311.997 kb on - strand, within HMPREF1058_RS14000 at 1312.016 kb on + strand, within HMPREF1058_RS14000 at 1312.027 kb on + strand, within HMPREF1058_RS14000 at 1312.028 kb on - strand, within HMPREF1058_RS14000 at 1312.036 kb on + strand, within HMPREF1058_RS14000 at 1312.077 kb on - strand, within HMPREF1058_RS14000 at 1312.098 kb on - strand, within HMPREF1058_RS14000 at 1312.108 kb on + strand, within HMPREF1058_RS14000 at 1312.154 kb on + strand, within HMPREF1058_RS14000 at 1312.155 kb on - strand, within HMPREF1058_RS14000 at 1312.167 kb on + strand, within HMPREF1058_RS14000 at 1312.230 kb on + strand, within HMPREF1058_RS14000
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 1,309,185 + HMPREF1058_RS14015 0.86 +0.5 1,309,186 - HMPREF1058_RS14015 0.86 +0.5 1,309,196 - HMPREF1058_RS14015 0.86 +0.1 1,309,256 - +0.9 1,309,343 + +0.1 1,309,361 + -0.2 1,309,365 + +1.9 1,309,366 - +0.3 1,309,387 + -0.4 1,309,394 + +1.8 1,309,395 - -0.3 1,309,405 + +0.3 1,309,432 + -0.3 1,309,432 + -0.3 1,309,451 + -1.8 1,309,458 - +0.2 1,309,483 + -0.1 1,309,559 - -0.1 1,309,562 + -2.8 1,309,563 - +0.6 1,309,578 - -0.1 1,309,581 - +1.4 1,309,749 - HMPREF1058_RS14010 0.18 -0.4 1,309,749 - HMPREF1058_RS14010 0.18 +1.4 1,309,753 + HMPREF1058_RS14010 0.19 +1.4 1,309,754 - HMPREF1058_RS14010 0.20 -0.4 1,309,793 + HMPREF1058_RS14010 0.29 -0.1 1,309,793 + HMPREF1058_RS14010 0.29 +1.3 1,309,794 - HMPREF1058_RS14010 0.29 -0.6 1,309,794 - HMPREF1058_RS14010 0.29 +0.3 1,309,795 + HMPREF1058_RS14010 0.30 -0.1 1,309,796 - HMPREF1058_RS14010 0.30 -0.2 1,309,813 + HMPREF1058_RS14010 0.34 -0.0 1,309,813 + HMPREF1058_RS14010 0.34 -2.3 1,309,820 + HMPREF1058_RS14010 0.36 +0.1 1,309,821 - HMPREF1058_RS14010 0.36 +0.4 1,309,823 + HMPREF1058_RS14010 0.37 +0.9 1,309,843 - HMPREF1058_RS14010 0.41 +0.8 1,309,854 + HMPREF1058_RS14010 0.44 -0.1 1,309,917 + HMPREF1058_RS14010 0.60 +0.2 1,309,935 + HMPREF1058_RS14010 0.64 -0.6 1,309,936 - HMPREF1058_RS14010 0.64 -0.0 1,309,940 - HMPREF1058_RS14010 0.65 -0.2 1,309,960 - HMPREF1058_RS14010 0.70 +0.6 1,309,971 + HMPREF1058_RS14010 0.73 -0.6 1,309,996 - HMPREF1058_RS14010 0.79 +0.9 1,310,039 + +1.3 1,310,039 + -0.4 1,310,167 - -0.1 1,310,206 + -1.9 1,310,345 + HMPREF1058_RS14005 0.16 +1.9 1,310,347 + HMPREF1058_RS14005 0.16 -0.4 1,310,347 + HMPREF1058_RS14005 0.16 -2.1 1,310,349 + HMPREF1058_RS14005 0.16 +0.3 1,310,390 + HMPREF1058_RS14005 0.20 -0.1 1,310,414 - HMPREF1058_RS14005 0.22 +1.9 1,310,465 - HMPREF1058_RS14005 0.27 +2.9 1,310,516 - HMPREF1058_RS14005 0.32 +0.3 1,310,521 + HMPREF1058_RS14005 0.32 +1.9 1,310,677 - HMPREF1058_RS14005 0.47 +0.3 1,310,766 + HMPREF1058_RS14005 0.55 -1.7 1,310,771 + HMPREF1058_RS14005 0.56 -1.2 1,310,822 - HMPREF1058_RS14005 0.61 +0.9 1,310,822 - HMPREF1058_RS14005 0.61 +1.9 1,310,931 + HMPREF1058_RS14005 0.71 +1.9 1,310,932 - HMPREF1058_RS14005 0.71 -1.5 1,311,012 + HMPREF1058_RS14005 0.79 -0.1 1,311,012 + HMPREF1058_RS14005 0.79 +0.3 1,311,144 + -0.1 1,311,268 - -0.4 1,311,307 + -0.3 1,311,496 + -1.2 1,311,509 + -0.3 1,311,518 + +0.2 1,311,519 - +0.4 1,311,548 - +0.5 1,311,550 - -0.6 1,311,578 - -0.5 1,311,615 - HMPREF1058_RS14000 0.12 -0.0 1,311,616 + HMPREF1058_RS14000 0.12 -1.1 1,311,623 - HMPREF1058_RS14000 0.13 -0.2 1,311,624 + HMPREF1058_RS14000 0.13 +0.9 1,311,625 - HMPREF1058_RS14000 0.13 -2.3 1,311,625 - HMPREF1058_RS14000 0.13 -0.4 1,311,625 - HMPREF1058_RS14000 0.13 -1.9 1,311,631 + HMPREF1058_RS14000 0.14 -0.2 1,311,643 + HMPREF1058_RS14000 0.15 +0.5 1,311,645 + HMPREF1058_RS14000 0.15 +0.1 1,311,646 - HMPREF1058_RS14000 0.16 -0.9 1,311,646 - HMPREF1058_RS14000 0.16 -0.3 1,311,658 + +0.3 1,311,664 - HMPREF1058_RS14000 0.18 +0.6 1,311,684 - HMPREF1058_RS14000 0.20 +0.9 1,311,685 + HMPREF1058_RS14000 0.20 +0.2 1,311,686 - HMPREF1058_RS14000 0.20 +0.1 1,311,689 - HMPREF1058_RS14000 0.21 -0.6 1,311,690 + HMPREF1058_RS14000 0.21 +0.4 1,311,690 + HMPREF1058_RS14000 0.21 +1.0 1,311,691 - HMPREF1058_RS14000 0.21 -0.1 1,311,798 - HMPREF1058_RS14000 0.33 +0.1 1,311,804 + HMPREF1058_RS14000 0.34 -0.5 1,311,894 - HMPREF1058_RS14000 0.44 +0.1 1,311,905 + HMPREF1058_RS14000 0.46 +0.9 1,311,906 - HMPREF1058_RS14000 0.46 -1.4 1,311,906 - HMPREF1058_RS14000 0.46 +0.2 1,311,915 + HMPREF1058_RS14000 0.47 -0.2 1,311,966 + HMPREF1058_RS14000 0.53 -2.0 1,311,966 + HMPREF1058_RS14000 0.53 +1.2 1,311,967 - HMPREF1058_RS14000 0.53 -0.1 1,311,967 - HMPREF1058_RS14000 0.53 -0.1 1,311,982 + HMPREF1058_RS14000 0.55 -0.1 1,311,984 + HMPREF1058_RS14000 0.55 -0.6 1,311,996 + HMPREF1058_RS14000 0.56 +0.2 1,311,996 + HMPREF1058_RS14000 0.56 +1.3 1,311,997 - HMPREF1058_RS14000 0.56 -0.1 1,312,016 + HMPREF1058_RS14000 0.59 +0.1 1,312,027 + HMPREF1058_RS14000 0.60 +1.8 1,312,028 - HMPREF1058_RS14000 0.60 +0.0 1,312,036 + HMPREF1058_RS14000 0.61 -0.4 1,312,077 - HMPREF1058_RS14000 0.66 -0.8 1,312,098 - HMPREF1058_RS14000 0.68 +0.1 1,312,108 + HMPREF1058_RS14000 0.69 +0.6 1,312,154 + HMPREF1058_RS14000 0.75 -0.3 1,312,155 - HMPREF1058_RS14000 0.75 -0.7 1,312,167 + HMPREF1058_RS14000 0.76 -0.8 1,312,230 + HMPREF1058_RS14000 0.83 -0.0
Or see this region's nucleotide sequence