Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS13970 and HMPREF1058_RS13965 are separated by 4 nucleotides HMPREF1058_RS13965 and HMPREF1058_RS13960 are separated by 52 nucleotides HMPREF1058_RS13960 and HMPREF1058_RS13955 overlap by 17 nucleotides
HMPREF1058_RS13970: HMPREF1058_RS13970 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,316,963 to 1,318,192
_RS13970
HMPREF1058_RS13965: HMPREF1058_RS13965 - hypothetical protein, at 1,318,197 to 1,318,616
_RS13965
HMPREF1058_RS13960: HMPREF1058_RS13960 - metal ABC transporter permease, at 1,318,669 to 1,319,520
_RS13960
HMPREF1058_RS13955: HMPREF1058_RS13955 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 1,319,504 to 1,319,932
_RS13955
Position (kb) 1318
1319 Strain fitness (log2 ratio) -2
-1
0
1 at 1317.403 kb on + strand, within HMPREF1058_RS13970 at 1317.414 kb on + strand, within HMPREF1058_RS13970 at 1317.430 kb on + strand, within HMPREF1058_RS13970 at 1317.575 kb on + strand, within HMPREF1058_RS13970 at 1317.623 kb on + strand, within HMPREF1058_RS13970 at 1317.954 kb on + strand, within HMPREF1058_RS13970 at 1317.959 kb on + strand, within HMPREF1058_RS13970 at 1317.963 kb on + strand, within HMPREF1058_RS13970 at 1318.142 kb on + strand at 1318.180 kb on - strand at 1318.188 kb on + strand at 1318.190 kb on + strand at 1318.258 kb on + strand, within HMPREF1058_RS13965 at 1318.259 kb on - strand, within HMPREF1058_RS13965 at 1318.408 kb on - strand, within HMPREF1058_RS13965 at 1318.458 kb on - strand, within HMPREF1058_RS13965 at 1318.553 kb on - strand, within HMPREF1058_RS13965 at 1318.595 kb on - strand at 1318.675 kb on - strand at 1318.676 kb on + strand at 1318.695 kb on + strand at 1318.696 kb on - strand at 1318.696 kb on - strand at 1318.763 kb on - strand, within HMPREF1058_RS13960 at 1318.763 kb on - strand, within HMPREF1058_RS13960 at 1318.840 kb on + strand, within HMPREF1058_RS13960 at 1318.860 kb on - strand, within HMPREF1058_RS13960 at 1318.926 kb on + strand, within HMPREF1058_RS13960 at 1318.977 kb on - strand, within HMPREF1058_RS13960 at 1318.977 kb on - strand, within HMPREF1058_RS13960 at 1318.980 kb on + strand, within HMPREF1058_RS13960 at 1319.105 kb on + strand, within HMPREF1058_RS13960 at 1319.106 kb on - strand, within HMPREF1058_RS13960 at 1319.176 kb on - strand, within HMPREF1058_RS13960 at 1319.253 kb on + strand, within HMPREF1058_RS13960 at 1319.254 kb on - strand, within HMPREF1058_RS13960 at 1319.255 kb on + strand, within HMPREF1058_RS13960 at 1319.256 kb on - strand, within HMPREF1058_RS13960 at 1319.256 kb on - strand at 1319.258 kb on + strand, within HMPREF1058_RS13960 at 1319.259 kb on - strand, within HMPREF1058_RS13960 at 1319.313 kb on + strand, within HMPREF1058_RS13960 at 1319.394 kb on - strand, within HMPREF1058_RS13960 at 1319.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 1,317,403 + HMPREF1058_RS13970 0.36 -2.5 1,317,414 + HMPREF1058_RS13970 0.37 +0.3 1,317,430 + HMPREF1058_RS13970 0.38 -1.7 1,317,575 + HMPREF1058_RS13970 0.50 -2.2 1,317,623 + HMPREF1058_RS13970 0.54 -0.4 1,317,954 + HMPREF1058_RS13970 0.81 -1.4 1,317,959 + HMPREF1058_RS13970 0.81 -1.7 1,317,963 + HMPREF1058_RS13970 0.81 -0.7 1,318,142 + +0.3 1,318,180 - +1.2 1,318,188 + -0.7 1,318,190 + +0.3 1,318,258 + HMPREF1058_RS13965 0.15 +0.3 1,318,259 - HMPREF1058_RS13965 0.15 -2.6 1,318,408 - HMPREF1058_RS13965 0.50 -0.1 1,318,458 - HMPREF1058_RS13965 0.62 -1.2 1,318,553 - HMPREF1058_RS13965 0.85 -0.7 1,318,595 - +0.7 1,318,675 - -0.1 1,318,676 + -0.7 1,318,695 + -0.6 1,318,696 - -0.0 1,318,696 - +0.1 1,318,763 - HMPREF1058_RS13960 0.11 -0.1 1,318,763 - HMPREF1058_RS13960 0.11 +0.9 1,318,840 + HMPREF1058_RS13960 0.20 -0.2 1,318,860 - HMPREF1058_RS13960 0.22 +0.2 1,318,926 + HMPREF1058_RS13960 0.30 +0.1 1,318,977 - HMPREF1058_RS13960 0.36 +0.3 1,318,977 - HMPREF1058_RS13960 0.36 +1.3 1,318,980 + HMPREF1058_RS13960 0.37 +0.1 1,319,105 + HMPREF1058_RS13960 0.51 -0.6 1,319,106 - HMPREF1058_RS13960 0.51 +0.3 1,319,176 - HMPREF1058_RS13960 0.60 -0.3 1,319,253 + HMPREF1058_RS13960 0.69 +1.0 1,319,254 - HMPREF1058_RS13960 0.69 +0.8 1,319,255 + HMPREF1058_RS13960 0.69 +0.2 1,319,256 - HMPREF1058_RS13960 0.69 -0.8 1,319,256 - +0.9 1,319,258 + HMPREF1058_RS13960 0.69 +0.6 1,319,259 - HMPREF1058_RS13960 0.69 +0.7 1,319,313 + HMPREF1058_RS13960 0.76 -0.6 1,319,394 - HMPREF1058_RS13960 0.85 -0.5 1,319,442 + +0.1
Or see this region's nucleotide sequence