Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13635
Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pectate 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
1,413,432 | + | HMPREF1058_RS13640 | 0.50 | -0.4 | |
1,413,432 | + | HMPREF1058_RS13640 | 0.50 | -0.5 | |
1,413,440 | + | HMPREF1058_RS13640 | 0.51 | -1.7 | |
1,413,444 | + | HMPREF1058_RS13640 | 0.51 | -0.2 | |
1,413,444 | + | HMPREF1058_RS13640 | 0.51 | -1.0 | |
1,413,444 | + | HMPREF1058_RS13640 | 0.51 | -0.4 | |
1,413,496 | + | HMPREF1058_RS13640 | 0.55 | -0.6 | |
1,413,538 | + | HMPREF1058_RS13640 | 0.57 | -1.1 | |
1,413,545 | + | HMPREF1058_RS13640 | 0.58 | +0.6 | |
1,413,545 | + | HMPREF1058_RS13640 | 0.58 | +0.3 | |
1,413,610 | + | HMPREF1058_RS13640 | 0.62 | -1.4 | |
1,413,763 | + | HMPREF1058_RS13640 | 0.72 | +0.9 | |
1,413,796 | + | HMPREF1058_RS13640 | 0.74 | -0.2 | |
1,413,829 | + | HMPREF1058_RS13640 | 0.77 | +0.1 | |
1,414,284 | - | HMPREF1058_RS13635 | 0.28 | -1.3 | |
1,414,368 | + | HMPREF1058_RS13635 | 0.45 | +0.0 | |
1,414,409 | + | HMPREF1058_RS13635 | 0.53 | -2.7 | |
1,414,436 | - | HMPREF1058_RS13635 | 0.58 | -2.2 | |
1,414,436 | - | HMPREF1058_RS13635 | 0.58 | -0.7 | |
1,414,524 | - | HMPREF1058_RS13635 | 0.76 | -3.3 | |
1,414,524 | - | HMPREF1058_RS13635 | 0.76 | -0.5 | |
1,414,572 | - | HMPREF1058_RS13635 | 0.86 | -1.4 | |
1,414,609 | + | -0.1 |
Or see this region's nucleotide sequence