Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12575

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
75,352	+				+1.9
75,568	+				-0.2
75,568	+				+0.1
75,569	-				-0.4
75,569	-				-0.6
75,570	+				-2.0
75,580	+				+1.1
75,581	-				+1.9
75,646	+				-0.8
75,647	-				-0.8
75,647	-				-1.8
75,649	-				-1.0
75,693	+				+0.2
75,693	+				-0.6
75,694	-				-0.7
75,695	+				-0.3
75,695	+				+0.6
75,715	+				-1.1
75,718	-				-1.6
75,843	-		HMPREF1058_RS12575	0.18	-1.0
75,847	+		HMPREF1058_RS12575	0.19	+0.2
75,848	-		HMPREF1058_RS12575	0.19	-0.5
75,934	-		HMPREF1058_RS12575	0.27	-1.0
75,949	+		HMPREF1058_RS12575	0.28	-0.9
75,954	+		HMPREF1058_RS12575	0.29	-1.0
76,088	+		HMPREF1058_RS12575	0.42	-1.6
76,089	-		HMPREF1058_RS12575	0.42	-0.9
76,089	-		HMPREF1058_RS12575	0.42	-1.5
76,089	-		HMPREF1058_RS12575	0.42	-0.5
76,089	-		HMPREF1058_RS12575	0.42	-0.8
76,093	-		HMPREF1058_RS12575	0.42	-0.4
76,126	+		HMPREF1058_RS12575	0.45	-0.6
76,127	-		HMPREF1058_RS12575	0.45	-0.5
76,170	-		HMPREF1058_RS12575	0.50	-0.9
76,250	+		HMPREF1058_RS12575	0.57	-1.5
76,251	-		HMPREF1058_RS12575	0.57	-0.0
76,263	+		HMPREF1058_RS12575	0.59	-0.7
76,264	-		HMPREF1058_RS12575	0.59	-0.8
76,270	-		HMPREF1058_RS12575	0.59	-0.7
76,356	+		HMPREF1058_RS12575	0.67	-1.2
76,433	+		HMPREF1058_RS12575	0.75	-1.1
76,434	-		HMPREF1058_RS12575	0.75	-0.5
76,434	-		HMPREF1058_RS12575	0.75	-0.4
76,454	-		HMPREF1058_RS12575	0.77	-0.9
76,454	-		HMPREF1058_RS12575	0.77	-0.8
76,460	+		HMPREF1058_RS12575	0.77	-0.3
76,460	+		HMPREF1058_RS12575	0.77	-0.3
76,491	-		HMPREF1058_RS12575	0.80	-0.5
76,511	+		HMPREF1058_RS12575	0.82	-1.1
76,512	-		HMPREF1058_RS12575	0.82	-1.0
76,514	-		HMPREF1058_RS12575	0.83	-0.4
76,516	-		HMPREF1058_RS12575	0.83	+0.5
76,522	+		HMPREF1058_RS12575	0.83	-1.3
76,523	-		HMPREF1058_RS12575	0.83	-1.1
76,527	+		HMPREF1058_RS12575	0.84	-0.8
76,528	-		HMPREF1058_RS12575	0.84	-0.3
76,532	+		HMPREF1058_RS12575	0.84	-0.5
76,533	-		HMPREF1058_RS12575	0.84	+0.9
76,535	+		HMPREF1058_RS12575	0.85	-1.7
76,536	-		HMPREF1058_RS12575	0.85	-0.3
76,539	-		HMPREF1058_RS12575	0.85	-0.7
76,566	-		HMPREF1058_RS12575	0.88	-1.8
76,574	+		HMPREF1058_RS12575	0.88	-0.8
76,575	-		HMPREF1058_RS12575	0.88	-0.9
76,586	+		HMPREF1058_RS12575	0.89	-1.0
76,617	-				-0.4
76,761	-				+0.1
76,763	-				-1.1
76,770	-				+0.8
76,785	+				+0.4
76,912	+		HMPREF1058_RS12570	0.31	+1.0
76,913	-		HMPREF1058_RS12570	0.32	+1.9
76,913	-		HMPREF1058_RS12570	0.32	-0.2
76,931	+		HMPREF1058_RS12570	0.36	-0.6
76,953	-		HMPREF1058_RS12570	0.41	+1.4
77,015	-		HMPREF1058_RS12570	0.57	-0.8
77,049	+		HMPREF1058_RS12570	0.65	-0.3
77,050	-		HMPREF1058_RS12570	0.65	-0.2
77,080	+		HMPREF1058_RS12570	0.73	-0.2
77,080	+		HMPREF1058_RS12570	0.73	+0.1
77,081	-		HMPREF1058_RS12570	0.73	+0.1
77,164	+				-0.8
77,164	+				+0.5
77,181	-				-0.1
77,191	+				-0.2
77,192	-				+0.8
77,196	-				-0.7
77,197	+				+0.6
77,197	+				+1.7
77,198	-				+0.7
77,204	+				-0.6
77,208	+				+0.0
77,237	+				-0.6
77,237	+				-0.4
77,239	+				-0.5
77,239	+				+0.6
77,240	-				+0.3
77,244	+				-0.5
77,244	+				+0.2
77,255	-				-0.3
77,373	-		HMPREF1058_RS12565	0.28	-1.1
77,571	+		HMPREF1058_RS12565	0.71	-0.9