Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12460 and HMPREF1058_RS12455 are separated by 9 nucleotides HMPREF1058_RS12455 and HMPREF1058_RS12450 are separated by 222 nucleotides
HMPREF1058_RS12460: HMPREF1058_RS12460 - tetratricopeptide repeat protein, at 101,956 to 103,764
_RS12460
HMPREF1058_RS12455: HMPREF1058_RS12455 - dUTP diphosphatase, at 103,774 to 104,208
_RS12455
HMPREF1058_RS12450: HMPREF1058_RS12450 - deoxyguanosinetriphosphate triphosphohydrolase, at 104,431 to 105,762
_RS12450
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 102.865 kb on - strand, within HMPREF1058_RS12460 at 102.877 kb on - strand, within HMPREF1058_RS12460 at 102.907 kb on - strand, within HMPREF1058_RS12460 at 102.907 kb on - strand, within HMPREF1058_RS12460 at 102.935 kb on - strand, within HMPREF1058_RS12460 at 103.032 kb on - strand, within HMPREF1058_RS12460 at 103.095 kb on - strand, within HMPREF1058_RS12460 at 103.172 kb on + strand, within HMPREF1058_RS12460 at 103.173 kb on - strand, within HMPREF1058_RS12460 at 103.173 kb on - strand, within HMPREF1058_RS12460 at 103.344 kb on - strand, within HMPREF1058_RS12460 at 103.400 kb on + strand, within HMPREF1058_RS12460 at 103.414 kb on - strand, within HMPREF1058_RS12460 at 103.542 kb on - strand, within HMPREF1058_RS12460 at 103.605 kb on - strand at 103.662 kb on - strand at 103.726 kb on + strand at 103.727 kb on - strand at 103.727 kb on - strand at 103.727 kb on - strand at 103.733 kb on - strand at 103.906 kb on - strand, within HMPREF1058_RS12455 at 104.005 kb on - strand, within HMPREF1058_RS12455 at 104.125 kb on - strand, within HMPREF1058_RS12455 at 104.195 kb on - strand at 104.215 kb on - strand at 104.235 kb on - strand at 104.235 kb on - strand at 104.237 kb on - strand at 104.287 kb on - strand at 104.287 kb on - strand at 104.335 kb on - strand at 104.355 kb on + strand at 104.366 kb on - strand at 104.447 kb on + strand at 104.448 kb on - strand at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.985 kb on - strand, within HMPREF1058_RS12450 at 104.990 kb on - strand, within HMPREF1058_RS12450 at 105.080 kb on + strand, within HMPREF1058_RS12450 at 105.189 kb on - strand, within HMPREF1058_RS12450 at 105.189 kb on - strand, within HMPREF1058_RS12450 at 105.206 kb on + strand, within HMPREF1058_RS12450 at 105.207 kb on - strand, within HMPREF1058_RS12450
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 102,865 - HMPREF1058_RS12460 0.50 +0.6 102,877 - HMPREF1058_RS12460 0.51 -1.4 102,907 - HMPREF1058_RS12460 0.53 +0.7 102,907 - HMPREF1058_RS12460 0.53 -1.2 102,935 - HMPREF1058_RS12460 0.54 +0.1 103,032 - HMPREF1058_RS12460 0.59 +1.2 103,095 - HMPREF1058_RS12460 0.63 -1.1 103,172 + HMPREF1058_RS12460 0.67 -0.9 103,173 - HMPREF1058_RS12460 0.67 -0.3 103,173 - HMPREF1058_RS12460 0.67 -1.4 103,344 - HMPREF1058_RS12460 0.77 +0.2 103,400 + HMPREF1058_RS12460 0.80 +0.5 103,414 - HMPREF1058_RS12460 0.81 +0.5 103,542 - HMPREF1058_RS12460 0.88 -0.2 103,605 - -0.9 103,662 - -0.5 103,726 + +0.4 103,727 - -0.5 103,727 - -0.1 103,727 - -0.0 103,733 - +0.3 103,906 - HMPREF1058_RS12455 0.30 -1.8 104,005 - HMPREF1058_RS12455 0.53 -0.1 104,125 - HMPREF1058_RS12455 0.81 +0.4 104,195 - +1.4 104,215 - -0.4 104,235 - +0.5 104,235 - -0.1 104,237 - +0.9 104,287 - -0.2 104,287 - -0.5 104,335 - -0.0 104,355 + -0.1 104,366 - +0.1 104,447 + -0.7 104,448 - +0.0 104,715 + HMPREF1058_RS12450 0.21 +0.3 104,715 + HMPREF1058_RS12450 0.21 -0.4 104,715 + HMPREF1058_RS12450 0.21 -0.0 104,715 + HMPREF1058_RS12450 0.21 -1.3 104,985 - HMPREF1058_RS12450 0.42 +0.0 104,990 - HMPREF1058_RS12450 0.42 -0.2 105,080 + HMPREF1058_RS12450 0.49 -0.0 105,189 - HMPREF1058_RS12450 0.57 +0.1 105,189 - HMPREF1058_RS12450 0.57 -3.1 105,206 + HMPREF1058_RS12450 0.58 +0.0 105,207 - HMPREF1058_RS12450 0.58 +0.6
Or see this region's nucleotide sequence