Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12115

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12125 and HMPREF1058_RS12120 overlap by 11 nucleotidesHMPREF1058_RS12120 and HMPREF1058_RS12115 are separated by 63 nucleotidesHMPREF1058_RS12115 and HMPREF1058_RS12110 are separated by 4 nucleotides HMPREF1058_RS12125: HMPREF1058_RS12125 - hypothetical protein, at 196,038 to 196,517 _RS12125 HMPREF1058_RS12120: HMPREF1058_RS12120 - RNA polymerase sigma factor, at 196,507 to 197,016 _RS12120 HMPREF1058_RS12115: HMPREF1058_RS12115 - acetylglutamate kinase, at 197,080 to 197,853 _RS12115 HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750 _RS12110 Position (kb) 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.095 kb on - strand, within HMPREF1058_RS12125at 196.140 kb on - strand, within HMPREF1058_RS12125at 196.161 kb on + strand, within HMPREF1058_RS12125at 196.212 kb on - strand, within HMPREF1058_RS12125at 196.440 kb on + strand, within HMPREF1058_RS12125at 196.440 kb on + strand, within HMPREF1058_RS12125at 196.441 kb on - strand, within HMPREF1058_RS12125at 196.443 kb on + strand, within HMPREF1058_RS12125at 196.444 kb on - strand, within HMPREF1058_RS12125at 196.505 kb on - strandat 196.505 kb on - strandat 196.508 kb on + strandat 196.509 kb on - strandat 196.509 kb on - strandat 196.509 kb on - strandat 196.535 kb on + strandat 196.535 kb on + strandat 196.536 kb on - strandat 196.574 kb on - strand, within HMPREF1058_RS12120at 196.606 kb on - strand, within HMPREF1058_RS12120at 196.606 kb on - strand, within HMPREF1058_RS12120at 196.653 kb on + strand, within HMPREF1058_RS12120at 196.659 kb on + strand, within HMPREF1058_RS12120at 196.659 kb on + strand, within HMPREF1058_RS12120at 196.659 kb on + strand, within HMPREF1058_RS12120at 196.660 kb on - strand, within HMPREF1058_RS12120at 196.705 kb on + strand, within HMPREF1058_RS12120at 196.747 kb on - strand, within HMPREF1058_RS12120at 196.747 kb on - strand, within HMPREF1058_RS12120at 196.845 kb on - strand, within HMPREF1058_RS12120at 196.947 kb on + strand, within HMPREF1058_RS12120at 196.964 kb on + strand, within HMPREF1058_RS12120at 196.965 kb on - strand, within HMPREF1058_RS12120at 197.024 kb on + strandat 197.135 kb on - strandat 197.135 kb on - strandat 197.245 kb on - strand, within HMPREF1058_RS12115at 197.287 kb on + strand, within HMPREF1058_RS12115at 197.288 kb on - strand, within HMPREF1058_RS12115at 197.310 kb on - strand, within HMPREF1058_RS12115at 197.368 kb on - strand, within HMPREF1058_RS12115at 197.471 kb on - strand, within HMPREF1058_RS12115at 197.625 kb on - strand, within HMPREF1058_RS12115at 197.626 kb on + strand, within HMPREF1058_RS12115at 197.626 kb on + strand, within HMPREF1058_RS12115at 197.626 kb on + strand, within HMPREF1058_RS12115at 197.627 kb on - strand, within HMPREF1058_RS12115at 197.627 kb on - strandat 197.699 kb on - strand, within HMPREF1058_RS12115at 197.751 kb on + strand, within HMPREF1058_RS12115at 197.751 kb on + strand, within HMPREF1058_RS12115at 197.761 kb on + strand, within HMPREF1058_RS12115at 197.761 kb on + strand, within HMPREF1058_RS12115at 197.761 kb on + strand, within HMPREF1058_RS12115at 197.790 kb on + strandat 197.830 kb on + strandat 197.831 kb on - strandat 197.835 kb on + strandat 197.857 kb on - strandat 197.868 kb on + strandat 197.872 kb on + strandat 197.872 kb on + strandat 197.873 kb on - strandat 197.880 kb on + strandat 197.881 kb on - strandat 197.896 kb on - strandat 197.899 kb on + strandat 197.899 kb on + strandat 197.975 kb on - strandat 197.997 kb on + strandat 197.997 kb on + strandat 197.998 kb on - strandat 198.006 kb on + strandat 198.007 kb on - strandat 198.041 kb on + strandat 198.095 kb on - strand, within HMPREF1058_RS12110at 198.152 kb on + strand, within HMPREF1058_RS12110at 198.153 kb on - strand, within HMPREF1058_RS12110at 198.153 kb on - strand, within HMPREF1058_RS12110at 198.159 kb on - strand, within HMPREF1058_RS12110at 198.161 kb on - strand, within HMPREF1058_RS12110at 198.163 kb on - strand, within HMPREF1058_RS12110at 198.209 kb on + strand, within HMPREF1058_RS12110at 198.210 kb on - strand, within HMPREF1058_RS12110at 198.210 kb on - strand, within HMPREF1058_RS12110at 198.226 kb on + strand, within HMPREF1058_RS12110at 198.274 kb on + strand, within HMPREF1058_RS12110at 198.326 kb on + strand, within HMPREF1058_RS12110at 198.480 kb on + strand, within HMPREF1058_RS12110at 198.492 kb on - strandat 198.534 kb on - strand, within HMPREF1058_RS12110at 198.757 kb on + strand, within HMPREF1058_RS12110at 198.809 kb on - strand, within HMPREF1058_RS12110at 198.822 kb on + strand, within HMPREF1058_RS12110at 198.837 kb on + strand, within HMPREF1058_RS12110at 198.838 kb on - strand, within HMPREF1058_RS12110

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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196,095 - HMPREF1058_RS12125 0.12 -0.1
196,140 - HMPREF1058_RS12125 0.21 +0.2
196,161 + HMPREF1058_RS12125 0.26 +1.9
196,212 - HMPREF1058_RS12125 0.36 -1.2
196,440 + HMPREF1058_RS12125 0.84 +0.3
196,440 + HMPREF1058_RS12125 0.84 -0.9
196,441 - HMPREF1058_RS12125 0.84 -0.6
196,443 + HMPREF1058_RS12125 0.84 +0.4
196,444 - HMPREF1058_RS12125 0.85 -0.6
196,505 - +0.2
196,505 - +1.1
196,508 + -0.8
196,509 - -0.4
196,509 - -0.6
196,509 - +0.5
196,535 + +0.5
196,535 + +0.3
196,536 - +0.3
196,574 - HMPREF1058_RS12120 0.13 +0.4
196,606 - HMPREF1058_RS12120 0.19 +0.6
196,606 - HMPREF1058_RS12120 0.19 -0.0
196,653 + HMPREF1058_RS12120 0.29 -0.3
196,659 + HMPREF1058_RS12120 0.30 +0.0
196,659 + HMPREF1058_RS12120 0.30 -0.0
196,659 + HMPREF1058_RS12120 0.30 +1.1
196,660 - HMPREF1058_RS12120 0.30 -0.3
196,705 + HMPREF1058_RS12120 0.39 -0.9
196,747 - HMPREF1058_RS12120 0.47 +1.5
196,747 - HMPREF1058_RS12120 0.47 -1.6
196,845 - HMPREF1058_RS12120 0.66 +0.9
196,947 + HMPREF1058_RS12120 0.86 -0.9
196,964 + HMPREF1058_RS12120 0.90 -0.3
196,965 - HMPREF1058_RS12120 0.90 -0.3
197,024 + -0.3
197,135 - -1.2
197,135 - -0.8
197,245 - HMPREF1058_RS12115 0.21 -1.1
197,287 + HMPREF1058_RS12115 0.27 -0.9
197,288 - HMPREF1058_RS12115 0.27 +0.4
197,310 - HMPREF1058_RS12115 0.30 -1.5
197,368 - HMPREF1058_RS12115 0.37 -3.4
197,471 - HMPREF1058_RS12115 0.51 -1.7
197,625 - HMPREF1058_RS12115 0.70 -2.3
197,626 + HMPREF1058_RS12115 0.71 -1.8
197,626 + HMPREF1058_RS12115 0.71 -2.0
197,626 + HMPREF1058_RS12115 0.71 -2.6
197,627 - HMPREF1058_RS12115 0.71 -1.9
197,627 - -0.4
197,699 - HMPREF1058_RS12115 0.80 -3.1
197,751 + HMPREF1058_RS12115 0.87 -1.4
197,751 + HMPREF1058_RS12115 0.87 -2.8
197,761 + HMPREF1058_RS12115 0.88 -1.9
197,761 + HMPREF1058_RS12115 0.88 -2.5
197,761 + HMPREF1058_RS12115 0.88 -1.4
197,790 + -1.5
197,830 + -2.7
197,831 - -1.5
197,835 + -3.3
197,857 - -0.1
197,868 + -1.9
197,872 + -1.8
197,872 + -2.2
197,873 - -0.5
197,880 + -2.4
197,881 - -2.5
197,896 - -0.9
197,899 + -3.1
197,899 + -2.5
197,975 - -2.0
197,997 + -2.3
197,997 + -2.8
197,998 - -0.7
198,006 + -2.7
198,007 - -1.1
198,041 + -2.7
198,095 - HMPREF1058_RS12110 0.13 +0.3
198,152 + HMPREF1058_RS12110 0.16 -2.0
198,153 - HMPREF1058_RS12110 0.16 +0.0
198,153 - HMPREF1058_RS12110 0.16 -0.3
198,159 - HMPREF1058_RS12110 0.16 -1.1
198,161 - HMPREF1058_RS12110 0.16 -0.1
198,163 - HMPREF1058_RS12110 0.16 +0.1
198,209 + HMPREF1058_RS12110 0.19 -3.3
198,210 - HMPREF1058_RS12110 0.19 +0.4
198,210 - HMPREF1058_RS12110 0.19 +0.0
198,226 + HMPREF1058_RS12110 0.19 -0.1
198,274 + HMPREF1058_RS12110 0.22 -2.6
198,326 + HMPREF1058_RS12110 0.25 -0.5
198,480 + HMPREF1058_RS12110 0.33 -2.7
198,492 - -1.1
198,534 - HMPREF1058_RS12110 0.36 -0.5
198,757 + HMPREF1058_RS12110 0.47 -0.9
198,809 - HMPREF1058_RS12110 0.50 -0.1
198,822 + HMPREF1058_RS12110 0.51 -3.1
198,837 + HMPREF1058_RS12110 0.52 -0.9
198,838 - HMPREF1058_RS12110 0.52 -0.7

Or see this region's nucleotide sequence