Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11895 and HMPREF1058_RS11890 are separated by 3 nucleotides HMPREF1058_RS11890 and HMPREF1058_RS11885 are separated by 126 nucleotides
HMPREF1058_RS11895: HMPREF1058_RS11895 - lipopolysaccharide biosynthesis protein, at 250,904 to 252,349
_RS11895
HMPREF1058_RS11890: HMPREF1058_RS11890 - Holliday junction branch migration DNA helicase RuvB, at 252,353 to 253,381
_RS11890
HMPREF1058_RS11885: HMPREF1058_RS11885 - site-specific integrase, at 253,508 to 254,626
_RS11885
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.385 kb on - strand at 252.407 kb on - strand at 252.407 kb on - strand at 252.450 kb on - strand at 252.564 kb on - strand, within HMPREF1058_RS11890 at 252.565 kb on + strand, within HMPREF1058_RS11890 at 252.566 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.571 kb on + strand, within HMPREF1058_RS11890 at 252.590 kb on + strand, within HMPREF1058_RS11890 at 252.786 kb on - strand, within HMPREF1058_RS11890 at 252.787 kb on + strand, within HMPREF1058_RS11890 at 252.791 kb on - strand, within HMPREF1058_RS11890 at 252.818 kb on + strand, within HMPREF1058_RS11890 at 253.017 kb on - strand, within HMPREF1058_RS11890 at 253.038 kb on - strand, within HMPREF1058_RS11890 at 253.106 kb on - strand, within HMPREF1058_RS11890 at 253.166 kb on - strand, within HMPREF1058_RS11890 at 253.417 kb on - strand at 253.516 kb on + strand at 253.576 kb on + strand at 253.707 kb on + strand, within HMPREF1058_RS11885 at 253.718 kb on + strand, within HMPREF1058_RS11885 at 253.735 kb on - strand, within HMPREF1058_RS11885 at 253.791 kb on - strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 254.038 kb on + strand, within HMPREF1058_RS11885 at 254.148 kb on + strand, within HMPREF1058_RS11885 at 254.200 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.248 kb on + strand, within HMPREF1058_RS11885 at 254.249 kb on - strand, within HMPREF1058_RS11885 at 254.254 kb on - strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.339 kb on - strand, within HMPREF1058_RS11885
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 252,385 - +0.1 252,407 - -0.1 252,407 - -0.3 252,450 - +0.4 252,564 - HMPREF1058_RS11890 0.21 -1.3 252,565 + HMPREF1058_RS11890 0.21 -1.6 252,566 - HMPREF1058_RS11890 0.21 -1.2 252,569 - HMPREF1058_RS11890 0.21 +1.0 252,569 - HMPREF1058_RS11890 0.21 -1.4 252,571 + HMPREF1058_RS11890 0.21 -0.6 252,590 + HMPREF1058_RS11890 0.23 -0.0 252,786 - HMPREF1058_RS11890 0.42 -1.0 252,787 + HMPREF1058_RS11890 0.42 -1.5 252,791 - HMPREF1058_RS11890 0.43 +0.4 252,818 + HMPREF1058_RS11890 0.45 -2.1 253,017 - HMPREF1058_RS11890 0.65 -2.1 253,038 - HMPREF1058_RS11890 0.67 -1.0 253,106 - HMPREF1058_RS11890 0.73 -1.2 253,166 - HMPREF1058_RS11890 0.79 -1.7 253,417 - +0.2 253,516 + -0.1 253,576 + -0.5 253,707 + HMPREF1058_RS11885 0.18 -0.4 253,718 + HMPREF1058_RS11885 0.19 +0.0 253,735 - HMPREF1058_RS11885 0.20 -2.3 253,791 - HMPREF1058_RS11885 0.25 +0.2 253,808 + HMPREF1058_RS11885 0.27 +0.1 253,808 + HMPREF1058_RS11885 0.27 -0.5 254,038 + HMPREF1058_RS11885 0.47 -0.4 254,148 + HMPREF1058_RS11885 0.57 -0.6 254,200 - HMPREF1058_RS11885 0.62 -3.4 254,216 - HMPREF1058_RS11885 0.63 +0.0 254,216 - HMPREF1058_RS11885 0.63 -1.4 254,216 - HMPREF1058_RS11885 0.63 +0.2 254,248 + HMPREF1058_RS11885 0.66 -0.9 254,249 - HMPREF1058_RS11885 0.66 -0.4 254,254 - HMPREF1058_RS11885 0.67 -0.1 254,338 + HMPREF1058_RS11885 0.74 -0.7 254,338 + HMPREF1058_RS11885 0.74 +0.0 254,339 - HMPREF1058_RS11885 0.74 -0.2
Or see this region's nucleotide sequence