Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11390 and HMPREF1058_RS11385 are separated by 102 nucleotides HMPREF1058_RS11385 and HMPREF1058_RS11380 are separated by 4 nucleotides HMPREF1058_RS11380 and HMPREF1058_RS11375 overlap by 4 nucleotides HMPREF1058_RS11375 and HMPREF1058_RS11370 are separated by 114 nucleotides
HMPREF1058_RS11390: HMPREF1058_RS11390 - ribonuclease P protein component, at 390,726 to 391,118
_RS11390
HMPREF1058_RS11385: HMPREF1058_RS11385 - uroporphyrinogen-III synthase, at 391,221 to 391,970
_RS11385
HMPREF1058_RS11380: HMPREF1058_RS11380 - DUF4271 domain-containing protein, at 391,975 to 392,787
_RS11380
HMPREF1058_RS11375: HMPREF1058_RS11375 - TIGR00730 family Rossman fold protein, at 392,784 to 393,370
_RS11375
HMPREF1058_RS11370: HMPREF1058_RS11370 - methionine adenosyltransferase, at 393,485 to 394,777
_RS11370
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.181 kb on - strand at 391.211 kb on - strand at 391.211 kb on - strand at 392.193 kb on - strand, within HMPREF1058_RS11380 at 392.344 kb on + strand, within HMPREF1058_RS11380 at 392.349 kb on - strand, within HMPREF1058_RS11380 at 392.349 kb on - strand, within HMPREF1058_RS11380 at 392.357 kb on + strand, within HMPREF1058_RS11380 at 392.425 kb on + strand, within HMPREF1058_RS11380 at 392.427 kb on - strand, within HMPREF1058_RS11380 at 392.475 kb on + strand, within HMPREF1058_RS11380 at 392.476 kb on - strand, within HMPREF1058_RS11380 at 392.476 kb on - strand, within HMPREF1058_RS11380 at 392.688 kb on + strand, within HMPREF1058_RS11380 at 392.742 kb on - strand at 392.831 kb on + strand at 392.831 kb on + strand at 392.831 kb on + strand at 392.832 kb on - strand at 392.980 kb on + strand, within HMPREF1058_RS11375 at 393.287 kb on + strand, within HMPREF1058_RS11375 at 393.340 kb on + strand at 393.342 kb on + strand at 393.343 kb on - strand at 393.343 kb on - strand at 393.345 kb on - strand at 393.350 kb on + strand at 393.350 kb on + strand at 393.362 kb on - strand at 393.370 kb on + strand at 393.371 kb on - strand at 393.371 kb on - strand at 393.372 kb on + strand at 393.373 kb on - strand at 393.459 kb on + strand at 393.459 kb on + strand at 393.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 391,181 - +0.8 391,211 - -0.2 391,211 - -0.0 392,193 - HMPREF1058_RS11380 0.27 -2.6 392,344 + HMPREF1058_RS11380 0.45 -0.5 392,349 - HMPREF1058_RS11380 0.46 -0.8 392,349 - HMPREF1058_RS11380 0.46 -0.5 392,357 + HMPREF1058_RS11380 0.47 -1.1 392,425 + HMPREF1058_RS11380 0.55 -1.6 392,427 - HMPREF1058_RS11380 0.56 -1.0 392,475 + HMPREF1058_RS11380 0.62 -1.6 392,476 - HMPREF1058_RS11380 0.62 -1.0 392,476 - HMPREF1058_RS11380 0.62 -0.7 392,688 + HMPREF1058_RS11380 0.88 -3.7 392,742 - +0.1 392,831 + -0.3 392,831 + -0.4 392,831 + -0.2 392,832 - +0.8 392,980 + HMPREF1058_RS11375 0.33 -0.9 393,287 + HMPREF1058_RS11375 0.86 -0.5 393,340 + +1.2 393,342 + -0.3 393,343 - -0.3 393,343 - -0.5 393,345 - +0.1 393,350 + +0.4 393,350 + +0.1 393,362 - -0.1 393,370 + -1.1 393,371 - -0.2 393,371 - -0.4 393,372 + -0.9 393,373 - +0.4 393,459 + -0.6 393,459 + +2.0 393,460 - +1.5
Or see this region's nucleotide sequence