Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11270

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11280 and HMPREF1058_RS11275 are separated by 337 nucleotidesHMPREF1058_RS11275 and HMPREF1058_RS11270 are separated by 37 nucleotidesHMPREF1058_RS11270 and HMPREF1058_RS11265 are separated by 185 nucleotides HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413 _RS11280 HMPREF1058_RS11275: HMPREF1058_RS11275 - hypothetical protein, at 410,751 to 411,101 _RS11275 HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632 _RS11270 HMPREF1058_RS11265: HMPREF1058_RS11265 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 412,818 to 415,412 _RS11265 Position (kb) 411 412 413Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 410.167 kb on + strand, within HMPREF1058_RS11280at 410.167 kb on + strand, within HMPREF1058_RS11280at 410.167 kb on + strand, within HMPREF1058_RS11280at 410.168 kb on - strand, within HMPREF1058_RS11280at 410.241 kb on - strand, within HMPREF1058_RS11280at 410.270 kb on + strand, within HMPREF1058_RS11280at 410.270 kb on + strand, within HMPREF1058_RS11280at 410.414 kb on - strandat 410.427 kb on + strandat 410.571 kb on + strandat 410.574 kb on + strandat 410.574 kb on + strandat 410.579 kb on + strandat 410.588 kb on + strandat 410.690 kb on + strandat 410.690 kb on + strandat 410.691 kb on - strandat 410.699 kb on - strandat 410.734 kb on + strandat 410.735 kb on - strandat 410.735 kb on - strandat 410.769 kb on - strandat 410.774 kb on - strandat 410.779 kb on + strandat 410.782 kb on + strandat 410.867 kb on + strand, within HMPREF1058_RS11275at 410.868 kb on - strand, within HMPREF1058_RS11275at 410.882 kb on - strand, within HMPREF1058_RS11275at 410.896 kb on + strand, within HMPREF1058_RS11275at 410.896 kb on + strand, within HMPREF1058_RS11275at 411.030 kb on - strand, within HMPREF1058_RS11275at 411.031 kb on + strand, within HMPREF1058_RS11275at 411.031 kb on + strand, within HMPREF1058_RS11275at 411.114 kb on + strandat 411.115 kb on - strandat 411.118 kb on - strandat 411.136 kb on - strandat 411.148 kb on - strandat 411.193 kb on + strandat 411.304 kb on - strand, within HMPREF1058_RS11270at 411.306 kb on + strand, within HMPREF1058_RS11270at 411.306 kb on + strand, within HMPREF1058_RS11270at 411.306 kb on + strand, within HMPREF1058_RS11270at 411.325 kb on - strand, within HMPREF1058_RS11270at 411.337 kb on - strand, within HMPREF1058_RS11270at 411.351 kb on - strand, within HMPREF1058_RS11270at 411.436 kb on + strand, within HMPREF1058_RS11270at 411.437 kb on - strand, within HMPREF1058_RS11270at 411.474 kb on - strand, within HMPREF1058_RS11270at 411.580 kb on - strand, within HMPREF1058_RS11270at 411.734 kb on + strand, within HMPREF1058_RS11270at 411.740 kb on + strand, within HMPREF1058_RS11270at 411.741 kb on - strand, within HMPREF1058_RS11270at 411.879 kb on + strand, within HMPREF1058_RS11270at 411.880 kb on - strand, within HMPREF1058_RS11270at 411.880 kb on - strand, within HMPREF1058_RS11270at 411.982 kb on + strand, within HMPREF1058_RS11270at 411.983 kb on - strand, within HMPREF1058_RS11270at 412.047 kb on + strand, within HMPREF1058_RS11270at 412.048 kb on - strand, within HMPREF1058_RS11270at 412.048 kb on - strand, within HMPREF1058_RS11270at 412.048 kb on - strand, within HMPREF1058_RS11270at 412.091 kb on - strand, within HMPREF1058_RS11270at 412.179 kb on + strand, within HMPREF1058_RS11270at 412.181 kb on + strand, within HMPREF1058_RS11270at 412.181 kb on + strand, within HMPREF1058_RS11270at 412.181 kb on + strand, within HMPREF1058_RS11270at 412.181 kb on + strand, within HMPREF1058_RS11270at 412.181 kb on + strand, within HMPREF1058_RS11270at 412.182 kb on - strand, within HMPREF1058_RS11270at 412.185 kb on + strand, within HMPREF1058_RS11270at 412.186 kb on - strand, within HMPREF1058_RS11270at 412.298 kb on - strand, within HMPREF1058_RS11270at 412.299 kb on + strand, within HMPREF1058_RS11270at 412.299 kb on + strand, within HMPREF1058_RS11270at 412.360 kb on - strand, within HMPREF1058_RS11270at 412.513 kb on + strandat 412.578 kb on + strandat 412.610 kb on + strandat 412.635 kb on + strandat 412.697 kb on - strandat 412.774 kb on + strandat 412.792 kb on + strandat 412.793 kb on - strandat 412.797 kb on - strandat 412.818 kb on - strandat 412.837 kb on - strandat 412.888 kb on - strandat 413.006 kb on + strandat 413.013 kb on + strandat 413.120 kb on + strand, within HMPREF1058_RS11265at 413.120 kb on + strand, within HMPREF1058_RS11265at 413.121 kb on - strand, within HMPREF1058_RS11265at 413.121 kb on - strand, within HMPREF1058_RS11265at 413.121 kb on - strand, within HMPREF1058_RS11265at 413.271 kb on + strand, within HMPREF1058_RS11265at 413.463 kb on + strand, within HMPREF1058_RS11265at 413.463 kb on + strand, within HMPREF1058_RS11265at 413.504 kb on - strand, within HMPREF1058_RS11265at 413.512 kb on + strand, within HMPREF1058_RS11265at 413.512 kb on + strand, within HMPREF1058_RS11265at 413.524 kb on - strand, within HMPREF1058_RS11265at 413.599 kb on - strand, within HMPREF1058_RS11265

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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410,167 + HMPREF1058_RS11280 0.82 -0.7
410,167 + HMPREF1058_RS11280 0.82 +0.2
410,167 + HMPREF1058_RS11280 0.82 +0.5
410,168 - HMPREF1058_RS11280 0.82 -0.5
410,241 - HMPREF1058_RS11280 0.87 +0.2
410,270 + HMPREF1058_RS11280 0.89 -0.3
410,270 + HMPREF1058_RS11280 0.89 +0.1
410,414 - +0.2
410,427 + +1.5
410,571 + +0.4
410,574 + -0.4
410,574 + -0.3
410,579 + +0.4
410,588 + +2.0
410,690 + -0.1
410,690 + -0.4
410,691 - -0.9
410,699 - +1.6
410,734 + +0.9
410,735 - +0.4
410,735 - -2.7
410,769 - +0.4
410,774 - -0.0
410,779 + -0.8
410,782 + -0.6
410,867 + HMPREF1058_RS11275 0.33 -0.5
410,868 - HMPREF1058_RS11275 0.33 -0.7
410,882 - HMPREF1058_RS11275 0.37 +0.1
410,896 + HMPREF1058_RS11275 0.41 +0.8
410,896 + HMPREF1058_RS11275 0.41 -0.1
411,030 - HMPREF1058_RS11275 0.79 -0.5
411,031 + HMPREF1058_RS11275 0.80 -1.1
411,031 + HMPREF1058_RS11275 0.80 +0.3
411,114 + +0.1
411,115 - -2.7
411,118 - -1.6
411,136 - -0.5
411,148 - -2.1
411,193 + -0.5
411,304 - HMPREF1058_RS11270 0.11 -1.5
411,306 + HMPREF1058_RS11270 0.11 -0.3
411,306 + HMPREF1058_RS11270 0.11 -1.9
411,306 + HMPREF1058_RS11270 0.11 -2.9
411,325 - HMPREF1058_RS11270 0.12 +0.8
411,337 - HMPREF1058_RS11270 0.13 +1.0
411,351 - HMPREF1058_RS11270 0.14 -1.6
411,436 + HMPREF1058_RS11270 0.20 -1.5
411,437 - HMPREF1058_RS11270 0.20 -0.0
411,474 - HMPREF1058_RS11270 0.22 -3.6
411,580 - HMPREF1058_RS11270 0.30 -0.7
411,734 + HMPREF1058_RS11270 0.40 -1.7
411,740 + HMPREF1058_RS11270 0.40 -2.2
411,741 - HMPREF1058_RS11270 0.40 -1.2
411,879 + HMPREF1058_RS11270 0.50 -0.9
411,880 - HMPREF1058_RS11270 0.50 -0.8
411,880 - HMPREF1058_RS11270 0.50 -1.6
411,982 + HMPREF1058_RS11270 0.56 -0.9
411,983 - HMPREF1058_RS11270 0.56 +0.5
412,047 + HMPREF1058_RS11270 0.61 -0.8
412,048 - HMPREF1058_RS11270 0.61 -1.2
412,048 - HMPREF1058_RS11270 0.61 -0.8
412,048 - HMPREF1058_RS11270 0.61 -2.7
412,091 - HMPREF1058_RS11270 0.64 -2.6
412,179 + HMPREF1058_RS11270 0.70 -0.8
412,181 + HMPREF1058_RS11270 0.70 -1.0
412,181 + HMPREF1058_RS11270 0.70 -3.2
412,181 + HMPREF1058_RS11270 0.70 -0.3
412,181 + HMPREF1058_RS11270 0.70 -1.2
412,181 + HMPREF1058_RS11270 0.70 +0.1
412,182 - HMPREF1058_RS11270 0.70 -1.1
412,185 + HMPREF1058_RS11270 0.70 -0.5
412,186 - HMPREF1058_RS11270 0.70 -1.2
412,298 - HMPREF1058_RS11270 0.78 -1.0
412,299 + HMPREF1058_RS11270 0.78 -0.4
412,299 + HMPREF1058_RS11270 0.78 -0.6
412,360 - HMPREF1058_RS11270 0.82 +0.3
412,513 + -0.5
412,578 + +0.4
412,610 + +0.2
412,635 + -1.0
412,697 - -1.1
412,774 + -0.2
412,792 + -0.8
412,793 - +0.1
412,797 - +0.7
412,818 - +0.0
412,837 - +0.0
412,888 - +0.3
413,006 + -0.2
413,013 + +0.3
413,120 + HMPREF1058_RS11265 0.12 -0.7
413,120 + HMPREF1058_RS11265 0.12 +0.0
413,121 - HMPREF1058_RS11265 0.12 +0.6
413,121 - HMPREF1058_RS11265 0.12 -1.3
413,121 - HMPREF1058_RS11265 0.12 +0.2
413,271 + HMPREF1058_RS11265 0.17 -0.4
413,463 + HMPREF1058_RS11265 0.25 -1.3
413,463 + HMPREF1058_RS11265 0.25 -0.3
413,504 - HMPREF1058_RS11265 0.26 -0.5
413,512 + HMPREF1058_RS11265 0.27 +0.0
413,512 + HMPREF1058_RS11265 0.27 -0.4
413,524 - HMPREF1058_RS11265 0.27 -0.0
413,599 - HMPREF1058_RS11265 0.30 +0.2

Or see this region's nucleotide sequence