Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11225 and HMPREF1058_RS11220 are separated by 722 nucleotides HMPREF1058_RS11220 and HMPREF1058_RS11215 are separated by 30 nucleotides HMPREF1058_RS11215 and HMPREF1058_RS11210 are separated by 162 nucleotides
HMPREF1058_RS11225: HMPREF1058_RS11225 - TonB-dependent receptor, at 427,236 to 429,554
_RS11225
HMPREF1058_RS11220: HMPREF1058_RS11220 - RNA methyltransferase, at 430,277 to 430,813
_RS11220
HMPREF1058_RS11215: HMPREF1058_RS11215 - DUF4294 domain-containing protein, at 430,844 to 431,350
_RS11215
HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585
_RS11210
Position (kb) 430
431 Strain fitness (log2 ratio) -1
0
1
2
3 at 429.298 kb on - strand, within HMPREF1058_RS11225 at 429.300 kb on - strand, within HMPREF1058_RS11225 at 429.330 kb on - strand at 429.330 kb on - strand at 429.380 kb on + strand at 429.403 kb on - strand at 429.404 kb on + strand at 429.410 kb on + strand at 429.411 kb on - strand at 429.505 kb on - strand at 429.554 kb on + strand at 429.579 kb on - strand at 429.638 kb on - strand at 429.644 kb on + strand at 429.693 kb on - strand at 429.693 kb on - strand at 429.693 kb on - strand at 429.693 kb on - strand at 429.693 kb on - strand at 429.696 kb on - strand at 429.702 kb on - strand at 430.111 kb on - strand at 430.209 kb on + strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.212 kb on - strand at 430.234 kb on + strand at 430.265 kb on - strand at 430.313 kb on - strand at 430.389 kb on + strand, within HMPREF1058_RS11220 at 430.437 kb on - strand at 430.570 kb on + strand, within HMPREF1058_RS11220 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.084 kb on - strand, within HMPREF1058_RS11215 at 431.086 kb on - strand, within HMPREF1058_RS11215 at 431.158 kb on + strand, within HMPREF1058_RS11215 at 431.161 kb on - strand, within HMPREF1058_RS11215 at 431.239 kb on - strand, within HMPREF1058_RS11215 at 431.292 kb on - strand, within HMPREF1058_RS11215 at 431.297 kb on - strand, within HMPREF1058_RS11215 at 431.318 kb on - strand at 431.318 kb on - strand at 431.333 kb on + strand at 431.334 kb on - strand at 431.340 kb on - strand at 431.340 kb on - strand at 431.346 kb on - strand at 431.362 kb on + strand at 431.399 kb on + strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.470 kb on + strand at 431.477 kb on + strand at 431.560 kb on + strand at 431.561 kb on - strand at 431.665 kb on + strand at 431.710 kb on + strand at 431.716 kb on + strand at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.806 kb on + strand, within HMPREF1058_RS11210
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 429,298 - HMPREF1058_RS11225 0.89 +0.6 429,300 - HMPREF1058_RS11225 0.89 -0.4 429,330 - +0.0 429,330 - +1.2 429,380 + -0.2 429,403 - -0.0 429,404 + +2.5 429,410 + -0.2 429,411 - +0.6 429,505 - +1.0 429,554 + +0.5 429,579 - -0.1 429,638 - -0.4 429,644 + +0.3 429,693 - -0.4 429,693 - +0.5 429,693 - +0.5 429,693 - -0.1 429,693 - -0.8 429,696 - -0.0 429,702 - +0.1 430,111 - -0.3 430,209 + +0.5 430,210 - -0.5 430,210 - -0.1 430,210 - -1.2 430,210 - +0.1 430,210 - +3.4 430,212 - -0.7 430,234 + -0.3 430,265 - -0.8 430,313 - +0.6 430,389 + HMPREF1058_RS11220 0.21 -0.2 430,437 - +1.0 430,570 + HMPREF1058_RS11220 0.55 -0.8 431,083 + HMPREF1058_RS11215 0.47 +1.4 431,083 + HMPREF1058_RS11215 0.47 +0.6 431,084 - HMPREF1058_RS11215 0.47 +0.6 431,086 - HMPREF1058_RS11215 0.48 +2.1 431,158 + HMPREF1058_RS11215 0.62 +1.0 431,161 - HMPREF1058_RS11215 0.63 +1.1 431,239 - HMPREF1058_RS11215 0.78 -0.7 431,292 - HMPREF1058_RS11215 0.88 +0.1 431,297 - HMPREF1058_RS11215 0.89 +0.1 431,318 - -0.2 431,318 - +0.5 431,333 + +1.5 431,334 - +0.4 431,340 - +1.7 431,340 - +3.0 431,346 - +1.1 431,362 + -0.4 431,399 + +2.0 431,421 - +1.7 431,421 - +1.3 431,470 + +1.5 431,477 + +1.0 431,560 + -0.4 431,561 - -0.6 431,665 + -0.4 431,710 + -0.7 431,716 + +0.1 431,777 - HMPREF1058_RS11210 0.13 -0.2 431,777 - HMPREF1058_RS11210 0.13 -1.0 431,799 - HMPREF1058_RS11210 0.14 +0.4 431,799 - HMPREF1058_RS11210 0.14 +0.2 431,806 + HMPREF1058_RS11210 0.14 +0.1
Or see this region's nucleotide sequence