Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11220

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11225 and HMPREF1058_RS11220 are separated by 722 nucleotidesHMPREF1058_RS11220 and HMPREF1058_RS11215 are separated by 30 nucleotidesHMPREF1058_RS11215 and HMPREF1058_RS11210 are separated by 162 nucleotides HMPREF1058_RS11225: HMPREF1058_RS11225 - TonB-dependent receptor, at 427,236 to 429,554 _RS11225 HMPREF1058_RS11220: HMPREF1058_RS11220 - RNA methyltransferase, at 430,277 to 430,813 _RS11220 HMPREF1058_RS11215: HMPREF1058_RS11215 - DUF4294 domain-containing protein, at 430,844 to 431,350 _RS11215 HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585 _RS11210 Position (kb) 430 431Strain fitness (log2 ratio) -1 0 1 2 3at 429.298 kb on - strand, within HMPREF1058_RS11225at 429.300 kb on - strand, within HMPREF1058_RS11225at 429.330 kb on - strandat 429.330 kb on - strandat 429.380 kb on + strandat 429.403 kb on - strandat 429.404 kb on + strandat 429.410 kb on + strandat 429.411 kb on - strandat 429.505 kb on - strandat 429.554 kb on + strandat 429.579 kb on - strandat 429.638 kb on - strandat 429.644 kb on + strandat 429.693 kb on - strandat 429.693 kb on - strandat 429.693 kb on - strandat 429.693 kb on - strandat 429.693 kb on - strandat 429.696 kb on - strandat 429.702 kb on - strandat 430.111 kb on - strandat 430.209 kb on + strandat 430.210 kb on - strandat 430.210 kb on - strandat 430.210 kb on - strandat 430.210 kb on - strandat 430.210 kb on - strandat 430.212 kb on - strandat 430.234 kb on + strandat 430.265 kb on - strandat 430.313 kb on - strandat 430.389 kb on + strand, within HMPREF1058_RS11220at 430.437 kb on - strandat 430.570 kb on + strand, within HMPREF1058_RS11220at 431.083 kb on + strand, within HMPREF1058_RS11215at 431.083 kb on + strand, within HMPREF1058_RS11215at 431.084 kb on - strand, within HMPREF1058_RS11215at 431.086 kb on - strand, within HMPREF1058_RS11215at 431.158 kb on + strand, within HMPREF1058_RS11215at 431.161 kb on - strand, within HMPREF1058_RS11215at 431.239 kb on - strand, within HMPREF1058_RS11215at 431.292 kb on - strand, within HMPREF1058_RS11215at 431.297 kb on - strand, within HMPREF1058_RS11215at 431.318 kb on - strandat 431.318 kb on - strandat 431.333 kb on + strandat 431.334 kb on - strandat 431.340 kb on - strandat 431.340 kb on - strandat 431.346 kb on - strandat 431.362 kb on + strandat 431.399 kb on + strandat 431.421 kb on - strandat 431.421 kb on - strandat 431.470 kb on + strandat 431.477 kb on + strandat 431.560 kb on + strandat 431.561 kb on - strandat 431.665 kb on + strandat 431.710 kb on + strandat 431.716 kb on + strandat 431.777 kb on - strand, within HMPREF1058_RS11210at 431.777 kb on - strand, within HMPREF1058_RS11210at 431.799 kb on - strand, within HMPREF1058_RS11210at 431.799 kb on - strand, within HMPREF1058_RS11210at 431.806 kb on + strand, within HMPREF1058_RS11210

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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429,298 - HMPREF1058_RS11225 0.89 +0.6
429,300 - HMPREF1058_RS11225 0.89 -0.4
429,330 - +0.0
429,330 - +1.2
429,380 + -0.2
429,403 - -0.0
429,404 + +2.5
429,410 + -0.2
429,411 - +0.6
429,505 - +1.0
429,554 + +0.5
429,579 - -0.1
429,638 - -0.4
429,644 + +0.3
429,693 - -0.4
429,693 - +0.5
429,693 - +0.5
429,693 - -0.1
429,693 - -0.8
429,696 - -0.0
429,702 - +0.1
430,111 - -0.3
430,209 + +0.5
430,210 - -0.5
430,210 - -0.1
430,210 - -1.2
430,210 - +0.1
430,210 - +3.4
430,212 - -0.7
430,234 + -0.3
430,265 - -0.8
430,313 - +0.6
430,389 + HMPREF1058_RS11220 0.21 -0.2
430,437 - +1.0
430,570 + HMPREF1058_RS11220 0.55 -0.8
431,083 + HMPREF1058_RS11215 0.47 +1.4
431,083 + HMPREF1058_RS11215 0.47 +0.6
431,084 - HMPREF1058_RS11215 0.47 +0.6
431,086 - HMPREF1058_RS11215 0.48 +2.1
431,158 + HMPREF1058_RS11215 0.62 +1.0
431,161 - HMPREF1058_RS11215 0.63 +1.1
431,239 - HMPREF1058_RS11215 0.78 -0.7
431,292 - HMPREF1058_RS11215 0.88 +0.1
431,297 - HMPREF1058_RS11215 0.89 +0.1
431,318 - -0.2
431,318 - +0.5
431,333 + +1.5
431,334 - +0.4
431,340 - +1.7
431,340 - +3.0
431,346 - +1.1
431,362 + -0.4
431,399 + +2.0
431,421 - +1.7
431,421 - +1.3
431,470 + +1.5
431,477 + +1.0
431,560 + -0.4
431,561 - -0.6
431,665 + -0.4
431,710 + -0.7
431,716 + +0.1
431,777 - HMPREF1058_RS11210 0.13 -0.2
431,777 - HMPREF1058_RS11210 0.13 -1.0
431,799 - HMPREF1058_RS11210 0.14 +0.4
431,799 - HMPREF1058_RS11210 0.14 +0.2
431,806 + HMPREF1058_RS11210 0.14 +0.1

Or see this region's nucleotide sequence