Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11210 and HMPREF1058_RS11205 are separated by 45 nucleotides HMPREF1058_RS11205 and HMPREF1058_RS0119640 are separated by 544 nucleotides HMPREF1058_RS0119640 and HMPREF1058_RS11200 are separated by 189 nucleotides
HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585
_RS11210
HMPREF1058_RS11205: HMPREF1058_RS11205 - radical SAM protein, at 433,631 to 434,407
_RS11205
HMPREF1058_RS0119640: HMPREF1058_RS0119640 - hypothetical protein, at 434,952 to 435,128
_RS0119640
HMPREF1058_RS11200: HMPREF1058_RS11200 - sulfate permease, at 435,318 to 437,000
_RS11200
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.645 kb on - strand, within HMPREF1058_RS11210 at 432.648 kb on - strand, within HMPREF1058_RS11210 at 432.653 kb on - strand, within HMPREF1058_RS11210 at 432.810 kb on + strand, within HMPREF1058_RS11210 at 432.813 kb on + strand, within HMPREF1058_RS11210 at 432.830 kb on + strand, within HMPREF1058_RS11210 at 432.968 kb on + strand, within HMPREF1058_RS11210 at 432.986 kb on + strand, within HMPREF1058_RS11210 at 433.048 kb on + strand, within HMPREF1058_RS11210 at 433.049 kb on - strand, within HMPREF1058_RS11210 at 433.049 kb on - strand, within HMPREF1058_RS11210 at 433.052 kb on + strand, within HMPREF1058_RS11210 at 433.175 kb on - strand, within HMPREF1058_RS11210 at 433.175 kb on - strand, within HMPREF1058_RS11210 at 433.215 kb on - strand, within HMPREF1058_RS11210 at 433.218 kb on + strand, within HMPREF1058_RS11210 at 433.281 kb on - strand, within HMPREF1058_RS11210 at 433.283 kb on - strand, within HMPREF1058_RS11210 at 433.334 kb on - strand, within HMPREF1058_RS11210 at 433.345 kb on + strand, within HMPREF1058_RS11210 at 433.360 kb on + strand, within HMPREF1058_RS11210 at 433.360 kb on + strand, within HMPREF1058_RS11210 at 433.365 kb on - strand, within HMPREF1058_RS11210 at 433.383 kb on - strand at 433.410 kb on - strand at 433.412 kb on - strand at 433.412 kb on - strand at 433.487 kb on - strand at 433.512 kb on + strand at 433.559 kb on + strand at 433.560 kb on - strand at 433.675 kb on + strand at 433.676 kb on - strand at 434.048 kb on - strand, within HMPREF1058_RS11205 at 434.053 kb on + strand, within HMPREF1058_RS11205 at 434.195 kb on - strand, within HMPREF1058_RS11205 at 434.448 kb on + strand at 434.470 kb on + strand at 434.470 kb on + strand at 434.471 kb on - strand at 434.487 kb on + strand at 434.487 kb on + strand at 434.487 kb on + strand at 434.488 kb on - strand at 434.519 kb on - strand at 434.520 kb on + strand at 434.556 kb on - strand at 434.569 kb on + strand at 434.570 kb on - strand at 434.594 kb on - strand at 434.606 kb on + strand at 434.607 kb on - strand at 434.607 kb on - strand at 434.607 kb on - strand at 434.612 kb on + strand at 434.622 kb on + strand at 434.622 kb on + strand at 434.625 kb on - strand at 434.689 kb on + strand at 434.690 kb on - strand at 434.690 kb on - strand at 434.777 kb on + strand at 434.777 kb on + strand at 434.778 kb on - strand at 434.859 kb on + strand at 434.861 kb on + strand at 434.862 kb on - strand at 434.876 kb on + strand at 434.877 kb on - strand at 434.877 kb on - strand at 434.920 kb on + strand at 434.997 kb on - strand, within HMPREF1058_RS0119640 at 435.009 kb on - strand, within HMPREF1058_RS0119640 at 435.026 kb on + strand, within HMPREF1058_RS0119640 at 435.055 kb on + strand, within HMPREF1058_RS0119640 at 435.108 kb on + strand, within HMPREF1058_RS0119640 at 435.126 kb on + strand at 435.211 kb on + strand at 435.211 kb on + strand at 435.286 kb on + strand at 435.327 kb on + strand at 435.365 kb on + strand at 435.365 kb on + strand at 435.366 kb on - strand at 435.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 432,645 - HMPREF1058_RS11210 0.55 +0.7 432,648 - HMPREF1058_RS11210 0.55 -0.2 432,653 - HMPREF1058_RS11210 0.55 +0.5 432,810 + HMPREF1058_RS11210 0.63 +0.3 432,813 + HMPREF1058_RS11210 0.63 +0.7 432,830 + HMPREF1058_RS11210 0.64 -0.5 432,968 + HMPREF1058_RS11210 0.70 -0.4 432,986 + HMPREF1058_RS11210 0.71 +0.3 433,048 + HMPREF1058_RS11210 0.74 -0.6 433,049 - HMPREF1058_RS11210 0.74 +0.8 433,049 - HMPREF1058_RS11210 0.74 +0.2 433,052 + HMPREF1058_RS11210 0.74 +0.8 433,175 - HMPREF1058_RS11210 0.80 +0.4 433,175 - HMPREF1058_RS11210 0.80 -0.9 433,215 - HMPREF1058_RS11210 0.82 -0.6 433,218 + HMPREF1058_RS11210 0.82 +0.4 433,281 - HMPREF1058_RS11210 0.85 +0.7 433,283 - HMPREF1058_RS11210 0.85 -0.6 433,334 - HMPREF1058_RS11210 0.88 -0.7 433,345 + HMPREF1058_RS11210 0.88 -0.2 433,360 + HMPREF1058_RS11210 0.89 +2.0 433,360 + HMPREF1058_RS11210 0.89 +0.2 433,365 - HMPREF1058_RS11210 0.89 -0.1 433,383 - -2.0 433,410 - +0.6 433,412 - -0.6 433,412 - -0.9 433,487 - -0.6 433,512 + -0.5 433,559 + -0.3 433,560 - -0.7 433,675 + -1.0 433,676 - -0.0 434,048 - HMPREF1058_RS11205 0.54 +0.8 434,053 + HMPREF1058_RS11205 0.54 -1.9 434,195 - HMPREF1058_RS11205 0.73 -0.4 434,448 + -0.1 434,470 + -0.5 434,470 + -0.0 434,471 - -0.5 434,487 + +0.8 434,487 + +0.0 434,487 + +0.4 434,488 - -0.2 434,519 - +0.2 434,520 + +0.1 434,556 - -0.3 434,569 + +0.5 434,570 - +0.8 434,594 - +0.1 434,606 + +0.2 434,607 - +3.0 434,607 - -0.0 434,607 - -0.1 434,612 + -0.5 434,622 + +0.6 434,622 + -1.3 434,625 - +0.0 434,689 + -2.1 434,690 - -0.7 434,690 - +0.3 434,777 + +0.9 434,777 + -0.1 434,778 - +0.1 434,859 + -0.3 434,861 + +0.4 434,862 - -0.5 434,876 + -0.0 434,877 - -0.9 434,877 - -0.1 434,920 + +0.0 434,997 - HMPREF1058_RS0119640 0.25 -0.1 435,009 - HMPREF1058_RS0119640 0.32 -0.4 435,026 + HMPREF1058_RS0119640 0.42 -0.4 435,055 + HMPREF1058_RS0119640 0.58 -0.2 435,108 + HMPREF1058_RS0119640 0.88 +0.8 435,126 + -0.0 435,211 + -0.2 435,211 + -0.2 435,286 + +0.0 435,327 + -0.2 435,365 + +1.0 435,365 + -0.3 435,366 - -2.8 435,398 + +0.0
Or see this region's nucleotide sequence