Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10925 and HMPREF1058_RS10920 are separated by 0 nucleotides HMPREF1058_RS10920 and HMPREF1058_RS10915 are separated by 15 nucleotides
HMPREF1058_RS10925: HMPREF1058_RS10925 - arginine--tRNA ligase, at 527,407 to 529,227
_RS10925
HMPREF1058_RS10920: HMPREF1058_RS10920 - viroplasmin family protein, at 529,228 to 529,854
_RS10920
HMPREF1058_RS10915: HMPREF1058_RS10915 - alkaline phosphatase family protein, at 529,870 to 531,696
_RS10915
Position (kb) 529
530 Strain fitness (log2 ratio) -2
-1
0
1 at 529.225 kb on + strand at 529.314 kb on - strand, within HMPREF1058_RS10920 at 529.336 kb on + strand, within HMPREF1058_RS10920 at 529.396 kb on + strand, within HMPREF1058_RS10920 at 529.398 kb on + strand, within HMPREF1058_RS10920 at 529.400 kb on + strand, within HMPREF1058_RS10920 at 529.458 kb on + strand, within HMPREF1058_RS10920 at 529.525 kb on + strand, within HMPREF1058_RS10920 at 529.526 kb on - strand, within HMPREF1058_RS10920 at 529.568 kb on - strand, within HMPREF1058_RS10920 at 529.784 kb on - strand, within HMPREF1058_RS10920 at 529.870 kb on - strand at 529.888 kb on + strand at 529.891 kb on - strand at 529.901 kb on - strand at 529.908 kb on + strand at 529.993 kb on + strand at 529.994 kb on - strand at 529.996 kb on - strand at 530.003 kb on + strand at 530.072 kb on + strand, within HMPREF1058_RS10915 at 530.079 kb on - strand, within HMPREF1058_RS10915 at 530.148 kb on + strand, within HMPREF1058_RS10915 at 530.149 kb on - strand, within HMPREF1058_RS10915 at 530.183 kb on - strand, within HMPREF1058_RS10915 at 530.225 kb on - strand, within HMPREF1058_RS10915 at 530.317 kb on - strand, within HMPREF1058_RS10915 at 530.397 kb on - strand, within HMPREF1058_RS10915 at 530.421 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.423 kb on + strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.424 kb on - strand, within HMPREF1058_RS10915 at 530.436 kb on - strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.451 kb on + strand, within HMPREF1058_RS10915 at 530.456 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.634 kb on + strand, within HMPREF1058_RS10915 at 530.635 kb on - strand, within HMPREF1058_RS10915 at 530.797 kb on - strand, within HMPREF1058_RS10915
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 529,225 + +0.1 529,314 - HMPREF1058_RS10920 0.14 -1.9 529,336 + HMPREF1058_RS10920 0.17 +1.5 529,396 + HMPREF1058_RS10920 0.27 -1.0 529,398 + HMPREF1058_RS10920 0.27 +0.4 529,400 + HMPREF1058_RS10920 0.27 +0.4 529,458 + HMPREF1058_RS10920 0.37 -0.4 529,525 + HMPREF1058_RS10920 0.47 -0.8 529,526 - HMPREF1058_RS10920 0.48 -2.4 529,568 - HMPREF1058_RS10920 0.54 +1.7 529,784 - HMPREF1058_RS10920 0.89 -0.8 529,870 - -0.3 529,888 + -0.2 529,891 - +0.5 529,901 - +0.8 529,908 + -0.8 529,993 + -0.5 529,994 - +0.7 529,996 - -0.4 530,003 + -0.1 530,072 + HMPREF1058_RS10915 0.11 -0.3 530,079 - HMPREF1058_RS10915 0.11 +0.2 530,148 + HMPREF1058_RS10915 0.15 +0.3 530,149 - HMPREF1058_RS10915 0.15 -0.4 530,183 - HMPREF1058_RS10915 0.17 +0.2 530,225 - HMPREF1058_RS10915 0.19 -2.5 530,317 - HMPREF1058_RS10915 0.24 -0.3 530,397 - HMPREF1058_RS10915 0.29 +0.2 530,421 + HMPREF1058_RS10915 0.30 -0.4 530,423 + HMPREF1058_RS10915 0.30 +0.2 530,423 + HMPREF1058_RS10915 0.30 +0.2 530,424 - HMPREF1058_RS10915 0.30 +0.5 530,424 - HMPREF1058_RS10915 0.30 -0.5 530,436 - HMPREF1058_RS10915 0.31 +0.8 530,451 + HMPREF1058_RS10915 0.32 -1.7 530,451 + HMPREF1058_RS10915 0.32 -0.6 530,451 + HMPREF1058_RS10915 0.32 +0.1 530,456 + HMPREF1058_RS10915 0.32 +0.6 530,634 + HMPREF1058_RS10915 0.42 +0.1 530,634 + HMPREF1058_RS10915 0.42 +0.2 530,635 - HMPREF1058_RS10915 0.42 +0.3 530,797 - HMPREF1058_RS10915 0.51 -0.7
Or see this region's nucleotide sequence