Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119660 and HMPREF1058_RS10295 are separated by 180 nucleotides HMPREF1058_RS10295 and HMPREF1058_RS10290 overlap by 4 nucleotides HMPREF1058_RS10290 and HMPREF1058_RS10285 overlap by 4 nucleotides HMPREF1058_RS10285 and HMPREF1058_RS10275 are separated by 309 nucleotides
HMPREF1058_RS0119660: HMPREF1058_RS0119660 - DNA cytosine methyltransferase, at 693,868 to 694,671
_RS0119660
HMPREF1058_RS10295: HMPREF1058_RS10295 - hypothetical protein, at 694,852 to 695,319
_RS10295
HMPREF1058_RS10290: HMPREF1058_RS10290 - hypothetical protein, at 695,316 to 695,621
_RS10290
HMPREF1058_RS10285: HMPREF1058_RS10285 - hypothetical protein, at 695,618 to 695,902
_RS10285
HMPREF1058_RS10275: HMPREF1058_RS10275 - RNA-splicing ligase RtcB, at 696,212 to 697,399
_RS10275
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.019 kb on + strand, within HMPREF1058_RS0119660 at 694.022 kb on + strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.038 kb on - strand, within HMPREF1058_RS0119660 at 694.080 kb on - strand, within HMPREF1058_RS0119660 at 694.084 kb on + strand, within HMPREF1058_RS0119660 at 694.085 kb on - strand, within HMPREF1058_RS0119660 at 694.089 kb on + strand, within HMPREF1058_RS0119660 at 694.097 kb on + strand at 694.100 kb on - strand, within HMPREF1058_RS0119660 at 694.100 kb on - strand, within HMPREF1058_RS0119660 at 694.127 kb on - strand, within HMPREF1058_RS0119660 at 694.204 kb on - strand, within HMPREF1058_RS0119660 at 694.214 kb on + strand, within HMPREF1058_RS0119660 at 694.236 kb on - strand, within HMPREF1058_RS0119660 at 694.240 kb on - strand, within HMPREF1058_RS0119660 at 694.254 kb on - strand, within HMPREF1058_RS0119660 at 694.261 kb on + strand at 694.261 kb on + strand, within HMPREF1058_RS0119660 at 694.262 kb on - strand, within HMPREF1058_RS0119660 at 694.263 kb on + strand, within HMPREF1058_RS0119660 at 694.264 kb on - strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.266 kb on - strand, within HMPREF1058_RS0119660 at 694.266 kb on - strand at 694.291 kb on - strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.330 kb on + strand, within HMPREF1058_RS0119660 at 694.379 kb on + strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.464 kb on + strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.540 kb on - strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.589 kb on - strand, within HMPREF1058_RS0119660 at 694.600 kb on - strand at 694.600 kb on - strand at 694.642 kb on - strand at 694.646 kb on - strand at 694.668 kb on - strand at 694.682 kb on + strand at 694.683 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.745 kb on + strand at 694.847 kb on - strand at 694.848 kb on + strand at 694.849 kb on - strand at 694.849 kb on - strand at 694.892 kb on + strand at 694.902 kb on + strand, within HMPREF1058_RS10295 at 694.977 kb on + strand, within HMPREF1058_RS10295 at 695.166 kb on - strand, within HMPREF1058_RS10295 at 695.371 kb on + strand, within HMPREF1058_RS10290 at 695.395 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.538 kb on - strand, within HMPREF1058_RS10290 at 695.547 kb on - strand, within HMPREF1058_RS10290 at 695.606 kb on + strand at 695.617 kb on + strand at 695.625 kb on - strand at 695.658 kb on + strand, within HMPREF1058_RS10285 at 695.658 kb on + strand, within HMPREF1058_RS10285 at 695.663 kb on - strand, within HMPREF1058_RS10285 at 695.691 kb on + strand, within HMPREF1058_RS10285 at 695.746 kb on + strand at 695.767 kb on - strand, within HMPREF1058_RS10285 at 695.848 kb on - strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.859 kb on - strand, within HMPREF1058_RS10285 at 695.883 kb on + strand at 695.907 kb on - strand at 695.912 kb on + strand at 695.912 kb on + strand at 695.922 kb on + strand at 695.923 kb on - strand at 695.923 kb on - strand at 695.926 kb on + strand at 695.927 kb on - strand at 695.928 kb on + strand at 695.929 kb on - strand at 695.957 kb on - strand at 696.002 kb on + strand at 696.002 kb on + strand at 696.053 kb on + strand at 696.054 kb on - strand at 696.085 kb on + strand at 696.111 kb on + strand at 696.111 kb on + strand at 696.112 kb on - strand at 696.199 kb on - strand at 696.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 694,019 + HMPREF1058_RS0119660 0.19 -0.3 694,022 + HMPREF1058_RS0119660 0.19 -2.4 694,023 - HMPREF1058_RS0119660 0.19 -0.1 694,023 - HMPREF1058_RS0119660 0.19 +0.3 694,023 - HMPREF1058_RS0119660 0.19 -1.2 694,023 - HMPREF1058_RS0119660 0.19 -0.0 694,038 - HMPREF1058_RS0119660 0.21 -0.0 694,080 - HMPREF1058_RS0119660 0.26 -1.0 694,084 + HMPREF1058_RS0119660 0.27 -2.8 694,085 - HMPREF1058_RS0119660 0.27 +0.2 694,089 + HMPREF1058_RS0119660 0.27 -1.1 694,097 + +0.1 694,100 - HMPREF1058_RS0119660 0.29 -1.8 694,100 - HMPREF1058_RS0119660 0.29 -0.8 694,127 - HMPREF1058_RS0119660 0.32 -0.6 694,204 - HMPREF1058_RS0119660 0.42 -0.4 694,214 + HMPREF1058_RS0119660 0.43 -0.2 694,236 - HMPREF1058_RS0119660 0.46 -0.3 694,240 - HMPREF1058_RS0119660 0.46 +0.0 694,254 - HMPREF1058_RS0119660 0.48 -0.6 694,261 + -1.0 694,261 + HMPREF1058_RS0119660 0.49 -0.9 694,262 - HMPREF1058_RS0119660 0.49 +0.0 694,263 + HMPREF1058_RS0119660 0.49 -1.0 694,264 - HMPREF1058_RS0119660 0.49 -0.2 694,265 + HMPREF1058_RS0119660 0.49 -1.6 694,265 + HMPREF1058_RS0119660 0.49 -0.9 694,266 - HMPREF1058_RS0119660 0.50 -0.7 694,266 - -1.0 694,291 - HMPREF1058_RS0119660 0.53 +0.9 694,295 + HMPREF1058_RS0119660 0.53 +1.0 694,295 + HMPREF1058_RS0119660 0.53 -1.7 694,295 + HMPREF1058_RS0119660 0.53 +0.4 694,296 - HMPREF1058_RS0119660 0.53 -0.2 694,296 - HMPREF1058_RS0119660 0.53 +1.3 694,296 - HMPREF1058_RS0119660 0.53 -0.3 694,296 - HMPREF1058_RS0119660 0.53 -0.6 694,298 - HMPREF1058_RS0119660 0.53 -0.1 694,298 - HMPREF1058_RS0119660 0.53 +1.2 694,298 - HMPREF1058_RS0119660 0.53 -0.1 694,298 - HMPREF1058_RS0119660 0.53 -0.9 694,298 - HMPREF1058_RS0119660 0.53 +2.0 694,330 + HMPREF1058_RS0119660 0.57 -0.6 694,379 + HMPREF1058_RS0119660 0.64 -0.0 694,380 - HMPREF1058_RS0119660 0.64 +2.0 694,380 - HMPREF1058_RS0119660 0.64 -0.7 694,380 - HMPREF1058_RS0119660 0.64 -0.4 694,464 + HMPREF1058_RS0119660 0.74 -1.3 694,537 - HMPREF1058_RS0119660 0.83 -0.1 694,537 - HMPREF1058_RS0119660 0.83 -0.7 694,540 - HMPREF1058_RS0119660 0.84 -0.1 694,588 + HMPREF1058_RS0119660 0.90 +0.4 694,588 + HMPREF1058_RS0119660 0.90 -1.3 694,589 - HMPREF1058_RS0119660 0.90 -0.7 694,600 - -0.1 694,600 - -2.2 694,642 - +1.0 694,646 - -0.0 694,668 - +0.3 694,682 + -1.1 694,683 - -1.2 694,725 - +0.9 694,725 - -0.2 694,745 + -1.2 694,847 - +1.6 694,848 + -0.7 694,849 - -0.2 694,849 - -0.2 694,892 + -2.7 694,902 + HMPREF1058_RS10295 0.11 -1.3 694,977 + HMPREF1058_RS10295 0.27 -3.5 695,166 - HMPREF1058_RS10295 0.67 +0.8 695,371 + HMPREF1058_RS10290 0.18 -1.7 695,395 + HMPREF1058_RS10290 0.26 +0.8 695,517 + HMPREF1058_RS10290 0.66 -1.0 695,517 + HMPREF1058_RS10290 0.66 -1.3 695,537 + HMPREF1058_RS10290 0.72 -0.9 695,537 + HMPREF1058_RS10290 0.72 -1.8 695,538 - HMPREF1058_RS10290 0.73 +0.7 695,547 - HMPREF1058_RS10290 0.75 +1.3 695,606 + -2.7 695,617 + -1.4 695,625 - +0.1 695,658 + HMPREF1058_RS10285 0.14 -1.5 695,658 + HMPREF1058_RS10285 0.14 -1.0 695,663 - HMPREF1058_RS10285 0.16 +0.1 695,691 + HMPREF1058_RS10285 0.26 -0.9 695,746 + +0.0 695,767 - HMPREF1058_RS10285 0.52 -0.6 695,848 - HMPREF1058_RS10285 0.81 +1.1 695,858 + HMPREF1058_RS10285 0.84 -1.9 695,858 + HMPREF1058_RS10285 0.84 -1.3 695,859 - HMPREF1058_RS10285 0.85 -0.6 695,883 + -1.4 695,907 - -0.2 695,912 + -0.7 695,912 + -0.1 695,922 + +1.4 695,923 - +0.4 695,923 - +0.8 695,926 + +1.0 695,927 - -0.2 695,928 + -3.3 695,929 - +0.1 695,957 - +0.5 696,002 + +0.9 696,002 + -1.7 696,053 + -1.5 696,054 - -1.3 696,085 + -1.0 696,111 + -1.5 696,111 + -1.6 696,112 - +0.2 696,199 - +0.1 696,305 - -0.8
Or see this region's nucleotide sequence