Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09925

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09935 and HMPREF1058_RS09930 are separated by 18 nucleotidesHMPREF1058_RS09930 and HMPREF1058_RS09925 are separated by 8 nucleotidesHMPREF1058_RS09925 and HMPREF1058_RS09920 are separated by 2 nucleotides HMPREF1058_RS09935: HMPREF1058_RS09935 - DUF3872 domain-containing protein, at 757,779 to 758,285 _RS09935 HMPREF1058_RS09930: HMPREF1058_RS09930 - toprim domain-containing protein, at 758,304 to 759,179 _RS09930 HMPREF1058_RS09925: HMPREF1058_RS09925 - conjugal transfer protein TraO, at 759,188 to 759,763 _RS09925 HMPREF1058_RS09920: HMPREF1058_RS09920 - conjugative transposon protein TraN, at 759,766 to 760,752 _RS09920 Position (kb) 759 760Strain fitness (log2 ratio) -1 0 1at 758.278 kb on - strandat 758.305 kb on + strandat 758.457 kb on + strand, within HMPREF1058_RS09930at 758.609 kb on + strand, within HMPREF1058_RS09930at 758.805 kb on + strand, within HMPREF1058_RS09930at 759.077 kb on - strand, within HMPREF1058_RS09930at 759.145 kb on - strandat 759.145 kb on - strandat 759.162 kb on + strandat 759.304 kb on - strand, within HMPREF1058_RS09925at 759.336 kb on + strand, within HMPREF1058_RS09925at 759.529 kb on - strand, within HMPREF1058_RS09925at 760.040 kb on + strand, within HMPREF1058_RS09920at 760.041 kb on - strand, within HMPREF1058_RS09920at 760.091 kb on + strand, within HMPREF1058_RS09920at 760.113 kb on - strand, within HMPREF1058_RS09920at 760.248 kb on - strand, within HMPREF1058_RS09920at 760.341 kb on - strand, within HMPREF1058_RS09920at 760.381 kb on + strand, within HMPREF1058_RS09920at 760.741 kb on + strandat 760.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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758,278 - -0.4
758,305 + -1.7
758,457 + HMPREF1058_RS09930 0.17 -0.2
758,609 + HMPREF1058_RS09930 0.35 +0.1
758,805 + HMPREF1058_RS09930 0.57 +0.6
759,077 - HMPREF1058_RS09930 0.88 +0.4
759,145 - -0.4
759,145 - -0.3
759,162 + -0.3
759,304 - HMPREF1058_RS09925 0.20 -1.2
759,336 + HMPREF1058_RS09925 0.26 -0.7
759,529 - HMPREF1058_RS09925 0.59 -0.7
760,040 + HMPREF1058_RS09920 0.28 +0.5
760,041 - HMPREF1058_RS09920 0.28 -0.5
760,091 + HMPREF1058_RS09920 0.33 -0.0
760,113 - HMPREF1058_RS09920 0.35 -0.8
760,248 - HMPREF1058_RS09920 0.49 +1.1
760,341 - HMPREF1058_RS09920 0.58 +0.4
760,381 + HMPREF1058_RS09920 0.62 -0.0
760,741 + +1.7
760,753 + +0.1

Or see this region's nucleotide sequence