Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09690 and HMPREF1058_RS09685 are separated by 153 nucleotides HMPREF1058_RS09685 and HMPREF1058_RS09680 are separated by 141 nucleotides
HMPREF1058_RS09690: HMPREF1058_RS09690 - DUF4369 domain-containing protein, at 819,924 to 820,991
_RS09690
HMPREF1058_RS09685: HMPREF1058_RS09685 - tetratricopeptide repeat protein, at 821,145 to 822,821
_RS09685
HMPREF1058_RS09680: HMPREF1058_RS09680 - site-specific tyrosine recombinase XerD, at 822,963 to 823,904
_RS09680
Position (kb) 821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 820.267 kb on - strand, within HMPREF1058_RS09690 at 820.446 kb on + strand, within HMPREF1058_RS09690 at 820.447 kb on - strand, within HMPREF1058_RS09690 at 820.447 kb on - strand, within HMPREF1058_RS09690 at 820.449 kb on - strand, within HMPREF1058_RS09690 at 820.451 kb on + strand, within HMPREF1058_RS09690 at 820.452 kb on - strand at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.453 kb on + strand, within HMPREF1058_RS09690 at 820.454 kb on - strand, within HMPREF1058_RS09690 at 820.468 kb on - strand, within HMPREF1058_RS09690 at 820.500 kb on + strand, within HMPREF1058_RS09690 at 820.501 kb on - strand, within HMPREF1058_RS09690 at 820.501 kb on - strand, within HMPREF1058_RS09690 at 820.510 kb on + strand, within HMPREF1058_RS09690 at 820.530 kb on + strand, within HMPREF1058_RS09690 at 820.557 kb on - strand, within HMPREF1058_RS09690 at 820.557 kb on - strand, within HMPREF1058_RS09690 at 820.623 kb on - strand, within HMPREF1058_RS09690 at 820.643 kb on - strand, within HMPREF1058_RS09690 at 820.649 kb on + strand, within HMPREF1058_RS09690 at 820.649 kb on + strand, within HMPREF1058_RS09690 at 820.650 kb on - strand, within HMPREF1058_RS09690 at 820.650 kb on - strand, within HMPREF1058_RS09690 at 820.741 kb on + strand, within HMPREF1058_RS09690 at 820.741 kb on + strand, within HMPREF1058_RS09690 at 820.742 kb on - strand, within HMPREF1058_RS09690 at 820.742 kb on - strand, within HMPREF1058_RS09690 at 820.743 kb on + strand, within HMPREF1058_RS09690 at 820.774 kb on - strand, within HMPREF1058_RS09690 at 820.785 kb on - strand, within HMPREF1058_RS09690 at 820.810 kb on + strand, within HMPREF1058_RS09690 at 820.816 kb on - strand, within HMPREF1058_RS09690 at 820.837 kb on - strand, within HMPREF1058_RS09690 at 820.837 kb on - strand, within HMPREF1058_RS09690 at 820.878 kb on + strand, within HMPREF1058_RS09690 at 820.879 kb on - strand, within HMPREF1058_RS09690 at 820.880 kb on + strand, within HMPREF1058_RS09690 at 820.880 kb on + strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.881 kb on - strand, within HMPREF1058_RS09690 at 820.902 kb on - strand at 821.039 kb on + strand at 821.041 kb on + strand at 821.041 kb on + strand at 821.042 kb on - strand at 821.138 kb on - strand at 821.138 kb on - strand at 821.138 kb on - strand at 821.141 kb on + strand at 821.141 kb on + strand at 821.142 kb on - strand at 821.144 kb on - strand at 821.164 kb on + strand at 821.330 kb on + strand, within HMPREF1058_RS09685 at 821.330 kb on + strand, within HMPREF1058_RS09685 at 821.331 kb on - strand, within HMPREF1058_RS09685 at 821.385 kb on - strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.440 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.442 kb on + strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.443 kb on - strand at 821.443 kb on - strand, within HMPREF1058_RS09685 at 821.553 kb on + strand, within HMPREF1058_RS09685 at 821.577 kb on - strand, within HMPREF1058_RS09685 at 821.649 kb on - strand, within HMPREF1058_RS09685 at 821.651 kb on + strand, within HMPREF1058_RS09685 at 821.652 kb on - strand, within HMPREF1058_RS09685 at 821.652 kb on - strand, within HMPREF1058_RS09685 at 821.654 kb on - strand, within HMPREF1058_RS09685 at 821.741 kb on - strand, within HMPREF1058_RS09685 at 821.741 kb on - strand, within HMPREF1058_RS09685 at 821.764 kb on - strand, within HMPREF1058_RS09685 at 821.824 kb on + strand, within HMPREF1058_RS09685 at 821.824 kb on + strand, within HMPREF1058_RS09685 at 821.835 kb on + strand, within HMPREF1058_RS09685 at 821.897 kb on + strand, within HMPREF1058_RS09685 at 821.940 kb on - strand, within HMPREF1058_RS09685 at 821.952 kb on + strand, within HMPREF1058_RS09685 at 821.952 kb on + strand, within HMPREF1058_RS09685 at 821.985 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.041 kb on + strand, within HMPREF1058_RS09685 at 822.079 kb on + strand, within HMPREF1058_RS09685 at 822.080 kb on - strand, within HMPREF1058_RS09685 at 822.182 kb on - strand, within HMPREF1058_RS09685 at 822.340 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.417 kb on - strand, within HMPREF1058_RS09685 at 822.421 kb on + strand, within HMPREF1058_RS09685 at 822.488 kb on - strand, within HMPREF1058_RS09685 at 822.529 kb on + strand, within HMPREF1058_RS09685 at 822.530 kb on - strand, within HMPREF1058_RS09685 at 822.675 kb on - strand at 822.805 kb on + strand at 822.806 kb on - strand at 822.821 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.826 kb on - strand at 822.861 kb on + strand at 822.863 kb on + strand at 822.899 kb on - strand at 822.913 kb on + strand at 822.914 kb on - strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.916 kb on - strand at 822.916 kb on - strand at 822.983 kb on + strand at 823.039 kb on - strand at 823.055 kb on + strand at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand at 823.321 kb on + strand, within HMPREF1058_RS09680 at 823.355 kb on + strand, within HMPREF1058_RS09680 at 823.377 kb on - strand, within HMPREF1058_RS09680 at 823.469 kb on - strand, within HMPREF1058_RS09680 at 823.543 kb on - strand, within HMPREF1058_RS09680 at 823.810 kb on + strand at 823.810 kb on + strand at 823.811 kb on - strand at 823.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 820,267 - HMPREF1058_RS09690 0.32 -0.5 820,446 + HMPREF1058_RS09690 0.49 +0.1 820,447 - HMPREF1058_RS09690 0.49 +0.2 820,447 - HMPREF1058_RS09690 0.49 -0.3 820,449 - HMPREF1058_RS09690 0.49 +2.0 820,451 + HMPREF1058_RS09690 0.49 -0.5 820,452 - +1.0 820,453 + HMPREF1058_RS09690 0.50 -1.9 820,453 + HMPREF1058_RS09690 0.50 -0.4 820,453 + HMPREF1058_RS09690 0.50 -0.8 820,454 - HMPREF1058_RS09690 0.50 +0.7 820,468 - HMPREF1058_RS09690 0.51 -1.7 820,500 + HMPREF1058_RS09690 0.54 -0.7 820,501 - HMPREF1058_RS09690 0.54 -0.4 820,501 - HMPREF1058_RS09690 0.54 -0.9 820,510 + HMPREF1058_RS09690 0.55 -1.3 820,530 + HMPREF1058_RS09690 0.57 +0.1 820,557 - HMPREF1058_RS09690 0.59 -0.8 820,557 - HMPREF1058_RS09690 0.59 -0.5 820,623 - HMPREF1058_RS09690 0.65 -1.1 820,643 - HMPREF1058_RS09690 0.67 -2.1 820,649 + HMPREF1058_RS09690 0.68 -1.2 820,649 + HMPREF1058_RS09690 0.68 -0.3 820,650 - HMPREF1058_RS09690 0.68 -1.4 820,650 - HMPREF1058_RS09690 0.68 +0.0 820,741 + HMPREF1058_RS09690 0.76 -0.5 820,741 + HMPREF1058_RS09690 0.76 +1.2 820,742 - HMPREF1058_RS09690 0.77 -0.6 820,742 - HMPREF1058_RS09690 0.77 -0.5 820,743 + HMPREF1058_RS09690 0.77 -1.7 820,774 - HMPREF1058_RS09690 0.80 -1.4 820,785 - HMPREF1058_RS09690 0.81 -0.4 820,810 + HMPREF1058_RS09690 0.83 -0.8 820,816 - HMPREF1058_RS09690 0.84 -0.6 820,837 - HMPREF1058_RS09690 0.85 -0.4 820,837 - HMPREF1058_RS09690 0.85 -0.2 820,878 + HMPREF1058_RS09690 0.89 -1.0 820,879 - HMPREF1058_RS09690 0.89 -3.0 820,880 + HMPREF1058_RS09690 0.90 -2.5 820,880 + HMPREF1058_RS09690 0.90 -1.0 820,881 - HMPREF1058_RS09690 0.90 +0.0 820,881 - HMPREF1058_RS09690 0.90 -0.7 820,881 - HMPREF1058_RS09690 0.90 -1.9 820,881 - HMPREF1058_RS09690 0.90 +1.0 820,902 - -1.4 821,039 + -1.1 821,041 + +1.0 821,041 + -0.3 821,042 - +0.3 821,138 - -0.5 821,138 - -0.8 821,138 - +0.0 821,141 + -0.4 821,141 + -0.3 821,142 - -0.4 821,144 - -0.6 821,164 + -2.2 821,330 + HMPREF1058_RS09685 0.11 -1.0 821,330 + HMPREF1058_RS09685 0.11 -1.0 821,331 - HMPREF1058_RS09685 0.11 -0.3 821,385 - HMPREF1058_RS09685 0.14 -0.0 821,440 + HMPREF1058_RS09685 0.18 -1.7 821,440 + HMPREF1058_RS09685 0.18 -1.7 821,440 + HMPREF1058_RS09685 0.18 -2.1 821,442 + HMPREF1058_RS09685 0.18 -1.8 821,442 + HMPREF1058_RS09685 0.18 +0.3 821,442 + HMPREF1058_RS09685 0.18 -2.6 821,443 - HMPREF1058_RS09685 0.18 -1.2 821,443 - HMPREF1058_RS09685 0.18 -0.7 821,443 - HMPREF1058_RS09685 0.18 -1.4 821,443 - HMPREF1058_RS09685 0.18 -1.5 821,443 - -0.0 821,443 - HMPREF1058_RS09685 0.18 -1.2 821,553 + HMPREF1058_RS09685 0.24 -1.4 821,577 - HMPREF1058_RS09685 0.26 +0.2 821,649 - HMPREF1058_RS09685 0.30 -1.8 821,651 + HMPREF1058_RS09685 0.30 -1.5 821,652 - HMPREF1058_RS09685 0.30 -1.5 821,652 - HMPREF1058_RS09685 0.30 -2.6 821,654 - HMPREF1058_RS09685 0.30 +0.3 821,741 - HMPREF1058_RS09685 0.36 -2.3 821,741 - HMPREF1058_RS09685 0.36 +1.4 821,764 - HMPREF1058_RS09685 0.37 -1.7 821,824 + HMPREF1058_RS09685 0.40 -2.8 821,824 + HMPREF1058_RS09685 0.40 -0.6 821,835 + HMPREF1058_RS09685 0.41 +0.1 821,897 + HMPREF1058_RS09685 0.45 -1.0 821,940 - HMPREF1058_RS09685 0.47 +2.2 821,952 + HMPREF1058_RS09685 0.48 -1.9 821,952 + HMPREF1058_RS09685 0.48 -1.7 821,985 - HMPREF1058_RS09685 0.50 -3.4 822,026 - HMPREF1058_RS09685 0.53 +0.2 822,026 - HMPREF1058_RS09685 0.53 -2.4 822,041 + HMPREF1058_RS09685 0.53 -2.7 822,079 + HMPREF1058_RS09685 0.56 -1.1 822,080 - HMPREF1058_RS09685 0.56 -3.5 822,182 - HMPREF1058_RS09685 0.62 +0.0 822,340 + HMPREF1058_RS09685 0.71 +0.2 822,416 + HMPREF1058_RS09685 0.76 -1.8 822,416 + HMPREF1058_RS09685 0.76 -2.0 822,417 - HMPREF1058_RS09685 0.76 -0.9 822,421 + HMPREF1058_RS09685 0.76 -1.0 822,488 - HMPREF1058_RS09685 0.80 -1.5 822,529 + HMPREF1058_RS09685 0.83 -1.4 822,530 - HMPREF1058_RS09685 0.83 -2.3 822,675 - -1.8 822,805 + -2.9 822,806 - -1.3 822,821 + -2.3 822,825 + -1.8 822,825 + -2.9 822,825 + -0.0 822,826 - +0.0 822,861 + -1.7 822,863 + -2.0 822,899 - -1.9 822,913 + -2.2 822,914 - +0.3 822,915 + -0.5 822,915 + -1.1 822,915 + -1.3 822,916 - -2.1 822,916 - -1.4 822,983 + -1.1 823,039 - +1.2 823,055 + +0.3 823,100 + HMPREF1058_RS09680 0.15 -0.9 823,100 + HMPREF1058_RS09680 0.15 +0.4 823,101 - HMPREF1058_RS09680 0.15 -1.5 823,101 - HMPREF1058_RS09680 0.15 +0.6 823,101 - HMPREF1058_RS09680 0.15 -1.7 823,101 - +1.0 823,321 + HMPREF1058_RS09680 0.38 -1.8 823,355 + HMPREF1058_RS09680 0.42 -0.1 823,377 - HMPREF1058_RS09680 0.44 -1.2 823,469 - HMPREF1058_RS09680 0.54 -0.9 823,543 - HMPREF1058_RS09680 0.62 -1.2 823,810 + -1.9 823,810 + -0.3 823,811 - +0.2 823,819 - -1.0
Or see this region's nucleotide sequence