Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09685 and HMPREF1058_RS09680 are separated by 141 nucleotides HMPREF1058_RS09680 and HMPREF1058_RS09675 are separated by 66 nucleotides HMPREF1058_RS09675 and HMPREF1058_RS09670 are separated by 32 nucleotides
HMPREF1058_RS09685: HMPREF1058_RS09685 - tetratricopeptide repeat protein, at 821,145 to 822,821
_RS09685
HMPREF1058_RS09680: HMPREF1058_RS09680 - site-specific tyrosine recombinase XerD, at 822,963 to 823,904
_RS09680
HMPREF1058_RS09675: HMPREF1058_RS09675 - type II 3-dehydroquinate dehydratase, at 823,971 to 824,393
_RS09675
HMPREF1058_RS09670: HMPREF1058_RS09670 - pyruvate kinase, at 824,426 to 825,889
_RS09670
Position (kb) 822
823
824 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 821.985 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.026 kb on - strand, within HMPREF1058_RS09685 at 822.041 kb on + strand, within HMPREF1058_RS09685 at 822.079 kb on + strand, within HMPREF1058_RS09685 at 822.080 kb on - strand, within HMPREF1058_RS09685 at 822.182 kb on - strand, within HMPREF1058_RS09685 at 822.340 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.416 kb on + strand, within HMPREF1058_RS09685 at 822.417 kb on - strand, within HMPREF1058_RS09685 at 822.421 kb on + strand, within HMPREF1058_RS09685 at 822.488 kb on - strand, within HMPREF1058_RS09685 at 822.529 kb on + strand, within HMPREF1058_RS09685 at 822.530 kb on - strand, within HMPREF1058_RS09685 at 822.675 kb on - strand at 822.805 kb on + strand at 822.806 kb on - strand at 822.821 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.825 kb on + strand at 822.826 kb on - strand at 822.861 kb on + strand at 822.863 kb on + strand at 822.899 kb on - strand at 822.913 kb on + strand at 822.914 kb on - strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.915 kb on + strand at 822.916 kb on - strand at 822.916 kb on - strand at 822.983 kb on + strand at 823.039 kb on - strand at 823.055 kb on + strand at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand at 823.321 kb on + strand, within HMPREF1058_RS09680 at 823.355 kb on + strand, within HMPREF1058_RS09680 at 823.377 kb on - strand, within HMPREF1058_RS09680 at 823.469 kb on - strand, within HMPREF1058_RS09680 at 823.543 kb on - strand, within HMPREF1058_RS09680 at 823.810 kb on + strand at 823.810 kb on + strand at 823.811 kb on - strand at 823.819 kb on - strand at 823.856 kb on - strand at 823.959 kb on + strand at 823.964 kb on + strand at 823.966 kb on + strand at 823.997 kb on + strand at 824.078 kb on + strand, within HMPREF1058_RS09675 at 824.193 kb on + strand, within HMPREF1058_RS09675 at 824.195 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.400 kb on + strand at 824.409 kb on + strand at 824.409 kb on + strand at 824.425 kb on + strand at 824.512 kb on + strand at 824.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 821,985 - HMPREF1058_RS09685 0.50 -3.4 822,026 - HMPREF1058_RS09685 0.53 +0.2 822,026 - HMPREF1058_RS09685 0.53 -2.4 822,041 + HMPREF1058_RS09685 0.53 -2.7 822,079 + HMPREF1058_RS09685 0.56 -1.1 822,080 - HMPREF1058_RS09685 0.56 -3.5 822,182 - HMPREF1058_RS09685 0.62 +0.0 822,340 + HMPREF1058_RS09685 0.71 +0.2 822,416 + HMPREF1058_RS09685 0.76 -1.8 822,416 + HMPREF1058_RS09685 0.76 -2.0 822,417 - HMPREF1058_RS09685 0.76 -0.9 822,421 + HMPREF1058_RS09685 0.76 -1.0 822,488 - HMPREF1058_RS09685 0.80 -1.5 822,529 + HMPREF1058_RS09685 0.83 -1.4 822,530 - HMPREF1058_RS09685 0.83 -2.3 822,675 - -1.8 822,805 + -2.9 822,806 - -1.3 822,821 + -2.3 822,825 + -1.8 822,825 + -2.9 822,825 + -0.0 822,826 - +0.0 822,861 + -1.7 822,863 + -2.0 822,899 - -1.9 822,913 + -2.2 822,914 - +0.3 822,915 + -0.5 822,915 + -1.1 822,915 + -1.3 822,916 - -2.1 822,916 - -1.4 822,983 + -1.1 823,039 - +1.2 823,055 + +0.3 823,100 + HMPREF1058_RS09680 0.15 -0.9 823,100 + HMPREF1058_RS09680 0.15 +0.4 823,101 - HMPREF1058_RS09680 0.15 -1.5 823,101 - HMPREF1058_RS09680 0.15 +0.6 823,101 - HMPREF1058_RS09680 0.15 -1.7 823,101 - +1.0 823,321 + HMPREF1058_RS09680 0.38 -1.8 823,355 + HMPREF1058_RS09680 0.42 -0.1 823,377 - HMPREF1058_RS09680 0.44 -1.2 823,469 - HMPREF1058_RS09680 0.54 -0.9 823,543 - HMPREF1058_RS09680 0.62 -1.2 823,810 + -1.9 823,810 + -0.3 823,811 - +0.2 823,819 - -1.0 823,856 - -0.8 823,959 + -0.5 823,964 + +1.1 823,966 + -0.7 823,997 + -2.1 824,078 + HMPREF1058_RS09675 0.25 -3.2 824,193 + HMPREF1058_RS09675 0.52 -1.7 824,195 + HMPREF1058_RS09675 0.53 -1.3 824,201 + HMPREF1058_RS09675 0.54 -2.7 824,201 + HMPREF1058_RS09675 0.54 -4.3 824,201 + HMPREF1058_RS09675 0.54 -3.2 824,400 + +0.6 824,409 + +0.1 824,409 + -0.2 824,425 + -0.2 824,512 + -1.6 824,734 + +0.4
Or see this region's nucleotide sequence