Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09585

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09595 and HMPREF1058_RS09590 are separated by 97 nucleotidesHMPREF1058_RS09590 and HMPREF1058_RS09585 are separated by 14 nucleotidesHMPREF1058_RS09585 and HMPREF1058_RS09580 are separated by 23 nucleotides HMPREF1058_RS09595: HMPREF1058_RS09595 - orotate phosphoribosyltransferase, at 839,701 to 840,339 _RS09595 HMPREF1058_RS09590: HMPREF1058_RS09590 - hypothetical protein, at 840,437 to 840,841 _RS09590 HMPREF1058_RS09585: HMPREF1058_RS09585 - argininosuccinate lyase, at 840,856 to 842,196 _RS09585 HMPREF1058_RS09580: HMPREF1058_RS09580 - aldo/keto reductase, at 842,220 to 843,212 _RS09580 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 840.145 kb on - strand, within HMPREF1058_RS09595at 840.337 kb on + strandat 840.359 kb on + strandat 840.360 kb on - strandat 840.361 kb on + strandat 840.464 kb on + strandat 840.465 kb on - strandat 840.465 kb on - strandat 840.497 kb on - strand, within HMPREF1058_RS09590at 840.497 kb on - strand, within HMPREF1058_RS09590at 840.510 kb on + strand, within HMPREF1058_RS09590at 840.528 kb on + strand, within HMPREF1058_RS09590at 840.553 kb on - strand, within HMPREF1058_RS09590at 840.559 kb on + strand, within HMPREF1058_RS09590at 840.595 kb on - strand, within HMPREF1058_RS09590at 840.595 kb on - strand, within HMPREF1058_RS09590at 840.640 kb on + strand, within HMPREF1058_RS09590at 840.739 kb on + strand, within HMPREF1058_RS09590at 840.739 kb on + strand, within HMPREF1058_RS09590at 840.757 kb on + strand, within HMPREF1058_RS09590at 840.763 kb on + strand, within HMPREF1058_RS09590at 840.763 kb on + strand, within HMPREF1058_RS09590at 840.763 kb on + strand, within HMPREF1058_RS09590at 840.855 kb on + strandat 840.903 kb on - strandat 840.944 kb on - strandat 840.962 kb on + strandat 840.962 kb on + strandat 840.982 kb on - strandat 840.999 kb on + strand, within HMPREF1058_RS09585at 841.035 kb on - strand, within HMPREF1058_RS09585at 841.046 kb on + strand, within HMPREF1058_RS09585at 841.053 kb on + strand, within HMPREF1058_RS09585at 841.057 kb on + strand, within HMPREF1058_RS09585at 841.057 kb on + strand, within HMPREF1058_RS09585at 841.057 kb on + strand, within HMPREF1058_RS09585at 841.057 kb on + strand, within HMPREF1058_RS09585at 841.058 kb on - strand, within HMPREF1058_RS09585at 841.109 kb on + strand, within HMPREF1058_RS09585at 841.110 kb on - strand, within HMPREF1058_RS09585at 841.121 kb on + strand, within HMPREF1058_RS09585at 841.219 kb on - strand, within HMPREF1058_RS09585at 841.290 kb on + strand, within HMPREF1058_RS09585at 841.291 kb on - strand, within HMPREF1058_RS09585at 841.291 kb on - strand, within HMPREF1058_RS09585at 841.294 kb on + strand, within HMPREF1058_RS09585at 841.294 kb on + strand, within HMPREF1058_RS09585at 841.295 kb on - strand, within HMPREF1058_RS09585at 841.295 kb on - strand, within HMPREF1058_RS09585at 841.295 kb on - strand, within HMPREF1058_RS09585at 841.296 kb on + strand, within HMPREF1058_RS09585at 841.296 kb on + strand, within HMPREF1058_RS09585at 841.296 kb on + strand, within HMPREF1058_RS09585at 841.297 kb on - strand, within HMPREF1058_RS09585at 841.297 kb on - strand, within HMPREF1058_RS09585at 841.526 kb on - strand, within HMPREF1058_RS09585at 841.527 kb on + strand, within HMPREF1058_RS09585at 841.527 kb on + strand, within HMPREF1058_RS09585at 841.527 kb on + strand, within HMPREF1058_RS09585at 841.528 kb on - strand, within HMPREF1058_RS09585at 841.528 kb on - strand, within HMPREF1058_RS09585at 841.537 kb on + strand, within HMPREF1058_RS09585at 841.537 kb on + strand, within HMPREF1058_RS09585at 841.558 kb on - strand, within HMPREF1058_RS09585at 841.632 kb on + strand, within HMPREF1058_RS09585at 841.632 kb on + strand, within HMPREF1058_RS09585at 841.696 kb on - strand, within HMPREF1058_RS09585at 841.697 kb on + strand, within HMPREF1058_RS09585at 841.832 kb on + strand, within HMPREF1058_RS09585at 841.891 kb on + strand, within HMPREF1058_RS09585at 841.893 kb on + strand, within HMPREF1058_RS09585at 841.893 kb on + strand, within HMPREF1058_RS09585at 841.894 kb on - strand, within HMPREF1058_RS09585at 841.924 kb on - strand, within HMPREF1058_RS09585at 841.924 kb on - strand, within HMPREF1058_RS09585at 841.948 kb on + strand, within HMPREF1058_RS09585at 841.948 kb on + strand, within HMPREF1058_RS09585at 841.948 kb on + strand, within HMPREF1058_RS09585at 841.948 kb on + strand, within HMPREF1058_RS09585at 841.949 kb on - strand, within HMPREF1058_RS09585at 841.957 kb on - strand, within HMPREF1058_RS09585at 842.014 kb on - strand, within HMPREF1058_RS09585at 842.033 kb on + strand, within HMPREF1058_RS09585at 842.033 kb on + strand, within HMPREF1058_RS09585at 842.034 kb on - strandat 842.074 kb on - strandat 842.074 kb on - strandat 842.085 kb on + strandat 842.187 kb on - strandat 842.200 kb on + strandat 842.213 kb on + strandat 842.226 kb on + strandat 842.227 kb on - strandat 842.268 kb on + strandat 842.301 kb on - strandat 842.321 kb on + strand, within HMPREF1058_RS09580at 842.366 kb on + strand, within HMPREF1058_RS09580at 842.367 kb on - strand, within HMPREF1058_RS09580at 842.411 kb on + strand, within HMPREF1058_RS09580at 842.412 kb on - strand, within HMPREF1058_RS09580at 842.499 kb on - strand, within HMPREF1058_RS09580at 842.499 kb on - strand, within HMPREF1058_RS09580at 842.610 kb on + strand, within HMPREF1058_RS09580at 842.620 kb on + strand, within HMPREF1058_RS09580at 842.620 kb on + strand, within HMPREF1058_RS09580at 842.626 kb on - strand, within HMPREF1058_RS09580at 842.627 kb on + strand, within HMPREF1058_RS09580at 842.628 kb on - strand, within HMPREF1058_RS09580at 842.687 kb on - strand, within HMPREF1058_RS09580at 842.687 kb on - strand, within HMPREF1058_RS09580at 842.709 kb on + strand, within HMPREF1058_RS09580at 842.709 kb on + strand, within HMPREF1058_RS09580at 842.709 kb on + strand, within HMPREF1058_RS09580at 842.710 kb on - strand, within HMPREF1058_RS09580at 842.807 kb on + strand, within HMPREF1058_RS09580at 842.807 kb on + strand, within HMPREF1058_RS09580at 842.807 kb on + strand, within HMPREF1058_RS09580at 842.810 kb on + strand, within HMPREF1058_RS09580at 842.811 kb on - strandat 842.811 kb on - strand, within HMPREF1058_RS09580at 842.873 kb on + strand, within HMPREF1058_RS09580at 842.912 kb on + strand, within HMPREF1058_RS09580

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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840,145 - HMPREF1058_RS09595 0.69 -1.0
840,337 + +0.3
840,359 + -0.0
840,360 - -2.0
840,361 + -0.6
840,464 + -0.9
840,465 - -2.0
840,465 - -2.5
840,497 - HMPREF1058_RS09590 0.15 -0.8
840,497 - HMPREF1058_RS09590 0.15 -4.0
840,510 + HMPREF1058_RS09590 0.18 -0.9
840,528 + HMPREF1058_RS09590 0.22 -0.2
840,553 - HMPREF1058_RS09590 0.29 -1.2
840,559 + HMPREF1058_RS09590 0.30 -0.8
840,595 - HMPREF1058_RS09590 0.39 -1.5
840,595 - HMPREF1058_RS09590 0.39 -1.2
840,640 + HMPREF1058_RS09590 0.50 -1.2
840,739 + HMPREF1058_RS09590 0.75 +0.0
840,739 + HMPREF1058_RS09590 0.75 -0.2
840,757 + HMPREF1058_RS09590 0.79 -0.4
840,763 + HMPREF1058_RS09590 0.80 -0.3
840,763 + HMPREF1058_RS09590 0.80 -0.7
840,763 + HMPREF1058_RS09590 0.80 -0.3
840,855 + -0.0
840,903 - +0.2
840,944 - -2.7
840,962 + +0.8
840,962 + -2.2
840,982 - -1.2
840,999 + HMPREF1058_RS09585 0.11 -1.5
841,035 - HMPREF1058_RS09585 0.13 -1.2
841,046 + HMPREF1058_RS09585 0.14 -1.9
841,053 + HMPREF1058_RS09585 0.15 -1.2
841,057 + HMPREF1058_RS09585 0.15 -1.8
841,057 + HMPREF1058_RS09585 0.15 -2.7
841,057 + HMPREF1058_RS09585 0.15 -1.4
841,057 + HMPREF1058_RS09585 0.15 -1.7
841,058 - HMPREF1058_RS09585 0.15 -2.2
841,109 + HMPREF1058_RS09585 0.19 -2.7
841,110 - HMPREF1058_RS09585 0.19 -1.2
841,121 + HMPREF1058_RS09585 0.20 -1.4
841,219 - HMPREF1058_RS09585 0.27 -1.8
841,290 + HMPREF1058_RS09585 0.32 -1.0
841,291 - HMPREF1058_RS09585 0.32 -4.9
841,291 - HMPREF1058_RS09585 0.32 -1.8
841,294 + HMPREF1058_RS09585 0.33 -1.4
841,294 + HMPREF1058_RS09585 0.33 +0.7
841,295 - HMPREF1058_RS09585 0.33 -2.9
841,295 - HMPREF1058_RS09585 0.33 -1.0
841,295 - HMPREF1058_RS09585 0.33 -1.9
841,296 + HMPREF1058_RS09585 0.33 -2.0
841,296 + HMPREF1058_RS09585 0.33 -1.0
841,296 + HMPREF1058_RS09585 0.33 -1.8
841,297 - HMPREF1058_RS09585 0.33 -1.2
841,297 - HMPREF1058_RS09585 0.33 -2.8
841,526 - HMPREF1058_RS09585 0.50 -1.4
841,527 + HMPREF1058_RS09585 0.50 -0.9
841,527 + HMPREF1058_RS09585 0.50 -1.7
841,527 + HMPREF1058_RS09585 0.50 -1.0
841,528 - HMPREF1058_RS09585 0.50 -1.2
841,528 - HMPREF1058_RS09585 0.50 -2.3
841,537 + HMPREF1058_RS09585 0.51 -1.1
841,537 + HMPREF1058_RS09585 0.51 -2.0
841,558 - HMPREF1058_RS09585 0.52 -2.2
841,632 + HMPREF1058_RS09585 0.58 -0.3
841,632 + HMPREF1058_RS09585 0.58 -0.2
841,696 - HMPREF1058_RS09585 0.63 -3.6
841,697 + HMPREF1058_RS09585 0.63 -1.0
841,832 + HMPREF1058_RS09585 0.73 -2.4
841,891 + HMPREF1058_RS09585 0.77 -1.8
841,893 + HMPREF1058_RS09585 0.77 -1.5
841,893 + HMPREF1058_RS09585 0.77 -0.5
841,894 - HMPREF1058_RS09585 0.77 -1.2
841,924 - HMPREF1058_RS09585 0.80 -0.2
841,924 - HMPREF1058_RS09585 0.80 -2.6
841,948 + HMPREF1058_RS09585 0.81 -1.3
841,948 + HMPREF1058_RS09585 0.81 -2.1
841,948 + HMPREF1058_RS09585 0.81 -1.8
841,948 + HMPREF1058_RS09585 0.81 -2.3
841,949 - HMPREF1058_RS09585 0.82 -1.4
841,957 - HMPREF1058_RS09585 0.82 -1.6
842,014 - HMPREF1058_RS09585 0.86 -3.1
842,033 + HMPREF1058_RS09585 0.88 -1.6
842,033 + HMPREF1058_RS09585 0.88 -1.9
842,034 - +1.4
842,074 - -2.3
842,074 - -1.8
842,085 + -1.3
842,187 - -2.0
842,200 + +0.7
842,213 + +0.4
842,226 + -0.3
842,227 - +0.2
842,268 + -0.0
842,301 - -0.4
842,321 + HMPREF1058_RS09580 0.10 +0.8
842,366 + HMPREF1058_RS09580 0.15 +0.0
842,367 - HMPREF1058_RS09580 0.15 -0.3
842,411 + HMPREF1058_RS09580 0.19 +0.1
842,412 - HMPREF1058_RS09580 0.19 -0.0
842,499 - HMPREF1058_RS09580 0.28 +0.2
842,499 - HMPREF1058_RS09580 0.28 +0.2
842,610 + HMPREF1058_RS09580 0.39 +0.0
842,620 + HMPREF1058_RS09580 0.40 +0.4
842,620 + HMPREF1058_RS09580 0.40 -0.3
842,626 - HMPREF1058_RS09580 0.41 -0.2
842,627 + HMPREF1058_RS09580 0.41 +0.1
842,628 - HMPREF1058_RS09580 0.41 +1.7
842,687 - HMPREF1058_RS09580 0.47 -0.5
842,687 - HMPREF1058_RS09580 0.47 -0.7
842,709 + HMPREF1058_RS09580 0.49 +0.3
842,709 + HMPREF1058_RS09580 0.49 +0.1
842,709 + HMPREF1058_RS09580 0.49 +0.3
842,710 - HMPREF1058_RS09580 0.49 -1.0
842,807 + HMPREF1058_RS09580 0.59 +0.9
842,807 + HMPREF1058_RS09580 0.59 -0.1
842,807 + HMPREF1058_RS09580 0.59 +0.4
842,810 + HMPREF1058_RS09580 0.59 +0.3
842,811 - -1.0
842,811 - HMPREF1058_RS09580 0.60 +0.2
842,873 + HMPREF1058_RS09580 0.66 -1.2
842,912 + HMPREF1058_RS09580 0.70 +0.1

Or see this region's nucleotide sequence