Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09190 and HMPREF1058_RS09185 are separated by 254 nucleotides HMPREF1058_RS09185 and HMPREF1058_RS09180 overlap by 4 nucleotides HMPREF1058_RS09180 and HMPREF1058_RS09175 overlap by 14 nucleotides
HMPREF1058_RS09190: HMPREF1058_RS09190 - hypothetical protein, at 918,743 to 919,414
_RS09190
HMPREF1058_RS09185: HMPREF1058_RS09185 - DUF4252 domain-containing protein, at 919,669 to 920,127
_RS09185
HMPREF1058_RS09180: HMPREF1058_RS09180 - hypothetical protein, at 920,124 to 920,654
_RS09180
HMPREF1058_RS09175: HMPREF1058_RS09175 - RNA polymerase sigma factor, at 920,641 to 921,153
_RS09175
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 918.705 kb on - strand at 918.729 kb on - strand at 918.733 kb on + strand at 918.961 kb on + strand, within HMPREF1058_RS09190 at 918.962 kb on - strand, within HMPREF1058_RS09190 at 918.962 kb on - strand, within HMPREF1058_RS09190 at 918.981 kb on - strand, within HMPREF1058_RS09190 at 918.999 kb on - strand, within HMPREF1058_RS09190 at 919.112 kb on - strand, within HMPREF1058_RS09190 at 919.219 kb on + strand, within HMPREF1058_RS09190 at 919.252 kb on + strand, within HMPREF1058_RS09190 at 919.252 kb on + strand, within HMPREF1058_RS09190 at 919.253 kb on - strand, within HMPREF1058_RS09190 at 919.253 kb on - strand, within HMPREF1058_RS09190 at 919.253 kb on - strand, within HMPREF1058_RS09190 at 919.273 kb on - strand, within HMPREF1058_RS09190 at 919.469 kb on + strand at 919.469 kb on + strand at 919.470 kb on - strand at 919.486 kb on - strand at 919.516 kb on + strand at 919.516 kb on + strand at 919.559 kb on - strand at 919.602 kb on - strand at 919.604 kb on + strand at 919.604 kb on + strand at 919.605 kb on - strand at 919.605 kb on - strand at 919.606 kb on + strand at 919.606 kb on + strand at 919.606 kb on + strand at 919.606 kb on + strand at 919.606 kb on + strand at 919.607 kb on - strand at 919.607 kb on - strand at 919.627 kb on - strand at 919.693 kb on + strand at 919.948 kb on + strand, within HMPREF1058_RS09185 at 919.957 kb on + strand, within HMPREF1058_RS09185 at 919.958 kb on - strand, within HMPREF1058_RS09185 at 919.959 kb on + strand, within HMPREF1058_RS09185 at 919.959 kb on + strand, within HMPREF1058_RS09185 at 919.959 kb on + strand, within HMPREF1058_RS09185 at 920.015 kb on + strand, within HMPREF1058_RS09185 at 920.015 kb on + strand, within HMPREF1058_RS09185 at 920.073 kb on - strand, within HMPREF1058_RS09185 at 920.112 kb on + strand at 920.112 kb on + strand at 920.113 kb on - strand at 920.113 kb on - strand at 920.114 kb on + strand at 920.246 kb on + strand, within HMPREF1058_RS09180 at 920.247 kb on - strand, within HMPREF1058_RS09180 at 920.247 kb on - strand, within HMPREF1058_RS09180 at 920.247 kb on - strand, within HMPREF1058_RS09180 at 920.247 kb on - strand, within HMPREF1058_RS09180 at 920.247 kb on - strand, within HMPREF1058_RS09180 at 920.265 kb on + strand, within HMPREF1058_RS09180 at 920.270 kb on - strand, within HMPREF1058_RS09180 at 920.320 kb on + strand, within HMPREF1058_RS09180 at 920.323 kb on - strand, within HMPREF1058_RS09180 at 920.539 kb on - strand, within HMPREF1058_RS09180 at 920.614 kb on + strand at 920.615 kb on - strand at 920.628 kb on + strand at 920.655 kb on - strand at 920.662 kb on + strand at 920.670 kb on + strand at 920.672 kb on + strand at 920.672 kb on + strand at 920.672 kb on + strand at 920.716 kb on + strand, within HMPREF1058_RS09175 at 920.717 kb on - strand, within HMPREF1058_RS09175 at 920.750 kb on - strand, within HMPREF1058_RS09175 at 921.054 kb on + strand, within HMPREF1058_RS09175 at 921.055 kb on - strand, within HMPREF1058_RS09175 at 921.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 918,705 - +0.7 918,729 - -0.6 918,733 + +0.4 918,961 + HMPREF1058_RS09190 0.32 +0.4 918,962 - HMPREF1058_RS09190 0.33 -1.5 918,962 - HMPREF1058_RS09190 0.33 +0.4 918,981 - HMPREF1058_RS09190 0.35 -0.5 918,999 - HMPREF1058_RS09190 0.38 -0.5 919,112 - HMPREF1058_RS09190 0.55 +0.3 919,219 + HMPREF1058_RS09190 0.71 -0.4 919,252 + HMPREF1058_RS09190 0.76 +0.1 919,252 + HMPREF1058_RS09190 0.76 -0.5 919,253 - HMPREF1058_RS09190 0.76 +1.2 919,253 - HMPREF1058_RS09190 0.76 +0.3 919,253 - HMPREF1058_RS09190 0.76 -0.3 919,273 - HMPREF1058_RS09190 0.79 -0.4 919,469 + +0.2 919,469 + +0.1 919,470 - +0.1 919,486 - -0.4 919,516 + -0.3 919,516 + -2.6 919,559 - -1.8 919,602 - +1.2 919,604 + -0.4 919,604 + -0.5 919,605 - -0.8 919,605 - -0.1 919,606 + -0.0 919,606 + +0.0 919,606 + +1.3 919,606 + +0.3 919,606 + -0.4 919,607 - +1.4 919,607 - -1.0 919,627 - +0.6 919,693 + -0.1 919,948 + HMPREF1058_RS09185 0.61 -0.2 919,957 + HMPREF1058_RS09185 0.63 -1.1 919,958 - HMPREF1058_RS09185 0.63 -0.8 919,959 + HMPREF1058_RS09185 0.63 +0.0 919,959 + HMPREF1058_RS09185 0.63 -0.6 919,959 + HMPREF1058_RS09185 0.63 +0.2 920,015 + HMPREF1058_RS09185 0.75 -1.1 920,015 + HMPREF1058_RS09185 0.75 -2.1 920,073 - HMPREF1058_RS09185 0.88 -0.3 920,112 + -0.4 920,112 + +2.0 920,113 - +0.1 920,113 - +0.2 920,114 + -1.9 920,246 + HMPREF1058_RS09180 0.23 -0.1 920,247 - HMPREF1058_RS09180 0.23 +1.0 920,247 - HMPREF1058_RS09180 0.23 -1.9 920,247 - HMPREF1058_RS09180 0.23 -0.1 920,247 - HMPREF1058_RS09180 0.23 -1.6 920,247 - HMPREF1058_RS09180 0.23 -0.7 920,265 + HMPREF1058_RS09180 0.27 -0.9 920,270 - HMPREF1058_RS09180 0.27 -1.6 920,320 + HMPREF1058_RS09180 0.37 -0.6 920,323 - HMPREF1058_RS09180 0.37 -1.8 920,539 - HMPREF1058_RS09180 0.78 -1.7 920,614 + +0.4 920,615 - +0.7 920,628 + +1.0 920,655 - -0.6 920,662 + +0.2 920,670 + -0.6 920,672 + -0.7 920,672 + +0.1 920,672 + -1.3 920,716 + HMPREF1058_RS09175 0.15 -0.8 920,717 - HMPREF1058_RS09175 0.15 -0.5 920,750 - HMPREF1058_RS09175 0.21 -0.0 921,054 + HMPREF1058_RS09175 0.81 +0.3 921,055 - HMPREF1058_RS09175 0.81 -0.1 921,116 + +2.0
Or see this region's nucleotide sequence