Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08295

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
1,195,673	+		HMPREF1058_RS08305	0.59	+0.7
1,195,707	+		HMPREF1058_RS08305	0.65	+1.0
1,195,707	+		HMPREF1058_RS08305	0.65	+0.2
1,195,751	+		HMPREF1058_RS08305	0.73	+2.0
1,196,573	-				+0.6
1,196,680	+				+0.3
1,196,681	-				-0.3
1,196,708	+				-1.2
1,196,708	+				+0.7
1,196,738	+				-2.7
1,196,738	+				-1.0
1,196,738	+				-1.2
1,196,738	+				-1.0
1,196,739	-				-0.9
1,196,739	-				-0.3
1,196,739	-				-1.6
1,196,739	-				-1.3
1,196,880	-		HMPREF1058_RS08295	0.15	+0.7
1,196,881	+		HMPREF1058_RS08295	0.15	-0.0
1,196,897	+		HMPREF1058_RS08295	0.16	-1.3
1,196,898	-		HMPREF1058_RS08295	0.16	-2.1
1,197,145	-		HMPREF1058_RS08295	0.28	-0.3
1,197,145	-		HMPREF1058_RS08295	0.28	+0.7
1,197,242	+		HMPREF1058_RS08295	0.33	+0.0
1,197,257	-		HMPREF1058_RS08295	0.33	-0.9
1,197,329	-		HMPREF1058_RS08295	0.37	-1.8
1,197,520	+		HMPREF1058_RS08295	0.46	-1.8
1,197,520	+		HMPREF1058_RS08295	0.46	-0.8
1,197,521	-		HMPREF1058_RS08295	0.46	-1.2
1,197,521	-		HMPREF1058_RS08295	0.46	-0.6
1,197,521	-		HMPREF1058_RS08295	0.46	-0.8
1,197,646	-		HMPREF1058_RS08295	0.52	-0.8
1,197,682	+		HMPREF1058_RS08295	0.54	-2.8
1,197,682	+		HMPREF1058_RS08295	0.54	-0.6
1,197,866	+		HMPREF1058_RS08295	0.62	-0.8
1,197,866	+		HMPREF1058_RS08295	0.62	-3.4
1,197,866	+		HMPREF1058_RS08295	0.62	+0.2
1,197,882	+		HMPREF1058_RS08295	0.63	+0.2
1,197,962	+		HMPREF1058_RS08295	0.67	-0.5
1,198,067	+		HMPREF1058_RS08295	0.72	-0.9
1,198,195	+		HMPREF1058_RS08295	0.78	-2.0
1,198,323	-		HMPREF1058_RS08295	0.84	-2.3
1,198,380	+		HMPREF1058_RS08295	0.87	-0.8
1,198,381	-		HMPREF1058_RS08295	0.87	-1.3
1,198,550	-				-0.2
1,198,555	-				-2.4
1,198,633	-				-0.4
1,198,764	-				-1.1
1,198,764	-				-1.5
1,198,871	+				+0.1
1,198,940	+		HMPREF1058_RS08290	0.14	+0.0
1,198,940	+		HMPREF1058_RS08290	0.14	-0.3
1,199,022	+		HMPREF1058_RS08290	0.32	-0.0
1,199,213	+		HMPREF1058_RS08290	0.73	+0.7
1,199,215	+		HMPREF1058_RS08290	0.73	+0.3
1,199,215	+		HMPREF1058_RS08290	0.73	-0.5
1,199,294	+				-0.2
1,199,324	+				+0.4
1,199,337	+				+0.0