Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08305 and HMPREF1058_RS08300 overlap by 4 nucleotides HMPREF1058_RS08300 and HMPREF1058_RS08295 are separated by 1 nucleotides HMPREF1058_RS08295 and HMPREF1058_RS08290 are separated by 220 nucleotides HMPREF1058_RS08290 and HMPREF1058_RS08285 are separated by 22 nucleotides
HMPREF1058_RS08305: HMPREF1058_RS08305 - DJ-1/PfpI family protein, at 1,195,349 to 1,195,900
_RS08305
HMPREF1058_RS08300: HMPREF1058_RS08300 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,195,897 to 1,196,556
_RS08300
HMPREF1058_RS08295: HMPREF1058_RS08295 - ATP-dependent DNA helicase RecG, at 1,196,558 to 1,198,654
_RS08295
HMPREF1058_RS08290: HMPREF1058_RS08290 - nucleoside-diphosphate kinase, at 1,198,875 to 1,199,339
_RS08290
HMPREF1058_RS08285: HMPREF1058_RS08285 - peptidoglycan DD-metalloendopeptidase family protein, at 1,199,362 to 1,200,252
_RS08285
Position (kb)
1196
1197
1198
1199 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1195.673 kb on + strand, within HMPREF1058_RS08305 at 1195.707 kb on + strand, within HMPREF1058_RS08305 at 1195.707 kb on + strand, within HMPREF1058_RS08305 at 1195.751 kb on + strand, within HMPREF1058_RS08305 at 1196.573 kb on - strand at 1196.680 kb on + strand at 1196.681 kb on - strand at 1196.708 kb on + strand at 1196.708 kb on + strand at 1196.738 kb on + strand at 1196.738 kb on + strand at 1196.738 kb on + strand at 1196.738 kb on + strand at 1196.739 kb on - strand at 1196.739 kb on - strand at 1196.739 kb on - strand at 1196.739 kb on - strand at 1196.880 kb on - strand, within HMPREF1058_RS08295 at 1196.881 kb on + strand, within HMPREF1058_RS08295 at 1196.897 kb on + strand, within HMPREF1058_RS08295 at 1196.898 kb on - strand, within HMPREF1058_RS08295 at 1197.145 kb on - strand, within HMPREF1058_RS08295 at 1197.145 kb on - strand, within HMPREF1058_RS08295 at 1197.242 kb on + strand, within HMPREF1058_RS08295 at 1197.257 kb on - strand, within HMPREF1058_RS08295 at 1197.329 kb on - strand, within HMPREF1058_RS08295 at 1197.520 kb on + strand, within HMPREF1058_RS08295 at 1197.520 kb on + strand, within HMPREF1058_RS08295 at 1197.521 kb on - strand, within HMPREF1058_RS08295 at 1197.521 kb on - strand, within HMPREF1058_RS08295 at 1197.521 kb on - strand, within HMPREF1058_RS08295 at 1197.646 kb on - strand, within HMPREF1058_RS08295 at 1197.682 kb on + strand, within HMPREF1058_RS08295 at 1197.682 kb on + strand, within HMPREF1058_RS08295 at 1197.866 kb on + strand, within HMPREF1058_RS08295 at 1197.866 kb on + strand, within HMPREF1058_RS08295 at 1197.866 kb on + strand, within HMPREF1058_RS08295 at 1197.882 kb on + strand, within HMPREF1058_RS08295 at 1197.962 kb on + strand, within HMPREF1058_RS08295 at 1198.067 kb on + strand, within HMPREF1058_RS08295 at 1198.195 kb on + strand, within HMPREF1058_RS08295 at 1198.323 kb on - strand, within HMPREF1058_RS08295 at 1198.380 kb on + strand, within HMPREF1058_RS08295 at 1198.381 kb on - strand, within HMPREF1058_RS08295 at 1198.550 kb on - strand at 1198.555 kb on - strand at 1198.633 kb on - strand at 1198.764 kb on - strand at 1198.764 kb on - strand at 1198.871 kb on + strand at 1198.940 kb on + strand, within HMPREF1058_RS08290 at 1198.940 kb on + strand, within HMPREF1058_RS08290 at 1199.022 kb on + strand, within HMPREF1058_RS08290 at 1199.213 kb on + strand, within HMPREF1058_RS08290 at 1199.215 kb on + strand, within HMPREF1058_RS08290 at 1199.215 kb on + strand, within HMPREF1058_RS08290 at 1199.294 kb on + strand at 1199.324 kb on + strand at 1199.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 1,195,673 + HMPREF1058_RS08305 0.59 +0.7 1,195,707 + HMPREF1058_RS08305 0.65 +1.0 1,195,707 + HMPREF1058_RS08305 0.65 +0.2 1,195,751 + HMPREF1058_RS08305 0.73 +2.0 1,196,573 - +0.6 1,196,680 + +0.3 1,196,681 - -0.3 1,196,708 + -1.2 1,196,708 + +0.7 1,196,738 + -2.7 1,196,738 + -1.0 1,196,738 + -1.2 1,196,738 + -1.0 1,196,739 - -0.9 1,196,739 - -0.3 1,196,739 - -1.6 1,196,739 - -1.3 1,196,880 - HMPREF1058_RS08295 0.15 +0.7 1,196,881 + HMPREF1058_RS08295 0.15 -0.0 1,196,897 + HMPREF1058_RS08295 0.16 -1.3 1,196,898 - HMPREF1058_RS08295 0.16 -2.1 1,197,145 - HMPREF1058_RS08295 0.28 -0.3 1,197,145 - HMPREF1058_RS08295 0.28 +0.7 1,197,242 + HMPREF1058_RS08295 0.33 +0.0 1,197,257 - HMPREF1058_RS08295 0.33 -0.9 1,197,329 - HMPREF1058_RS08295 0.37 -1.8 1,197,520 + HMPREF1058_RS08295 0.46 -1.8 1,197,520 + HMPREF1058_RS08295 0.46 -0.8 1,197,521 - HMPREF1058_RS08295 0.46 -1.2 1,197,521 - HMPREF1058_RS08295 0.46 -0.6 1,197,521 - HMPREF1058_RS08295 0.46 -0.8 1,197,646 - HMPREF1058_RS08295 0.52 -0.8 1,197,682 + HMPREF1058_RS08295 0.54 -2.8 1,197,682 + HMPREF1058_RS08295 0.54 -0.6 1,197,866 + HMPREF1058_RS08295 0.62 -0.8 1,197,866 + HMPREF1058_RS08295 0.62 -3.4 1,197,866 + HMPREF1058_RS08295 0.62 +0.2 1,197,882 + HMPREF1058_RS08295 0.63 +0.2 1,197,962 + HMPREF1058_RS08295 0.67 -0.5 1,198,067 + HMPREF1058_RS08295 0.72 -0.9 1,198,195 + HMPREF1058_RS08295 0.78 -2.0 1,198,323 - HMPREF1058_RS08295 0.84 -2.3 1,198,380 + HMPREF1058_RS08295 0.87 -0.8 1,198,381 - HMPREF1058_RS08295 0.87 -1.3 1,198,550 - -0.2 1,198,555 - -2.4 1,198,633 - -0.4 1,198,764 - -1.1 1,198,764 - -1.5 1,198,871 + +0.1 1,198,940 + HMPREF1058_RS08290 0.14 +0.0 1,198,940 + HMPREF1058_RS08290 0.14 -0.3 1,199,022 + HMPREF1058_RS08290 0.32 -0.0 1,199,213 + HMPREF1058_RS08290 0.73 +0.7 1,199,215 + HMPREF1058_RS08290 0.73 +0.3 1,199,215 + HMPREF1058_RS08290 0.73 -0.5 1,199,294 + -0.2 1,199,324 + +0.4 1,199,337 + +0.0
Or see this region's nucleotide sequence