Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07675 and HMPREF1058_RS07670 are separated by 262 nucleotides HMPREF1058_RS07670 and HMPREF1058_RS07665 are separated by 1 nucleotides HMPREF1058_RS07665 and HMPREF1058_RS07660 are separated by 93 nucleotides
HMPREF1058_RS07675: HMPREF1058_RS07675 - elongation factor G, at 163,273 to 165,432
_RS07675
HMPREF1058_RS07670: HMPREF1058_RS07670 - HAMP domain-containing histidine kinase, at 165,695 to 167,263
_RS07670
HMPREF1058_RS07665: HMPREF1058_RS07665 - response regulator transcription factor, at 167,265 to 167,963
_RS07665
HMPREF1058_RS07660: HMPREF1058_RS07660 - IS1182 family transposase, at 168,057 to 169,712
_RS07660
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -1
0
1
2
3 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.824 kb on + strand, within HMPREF1058_RS07675 at 164.826 kb on + strand, within HMPREF1058_RS07675 at 164.876 kb on + strand, within HMPREF1058_RS07675 at 164.877 kb on - strand, within HMPREF1058_RS07675 at 165.021 kb on - strand, within HMPREF1058_RS07675 at 165.114 kb on + strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.624 kb on + strand at 165.720 kb on + strand at 165.758 kb on + strand at 165.871 kb on + strand, within HMPREF1058_RS07670 at 165.979 kb on + strand, within HMPREF1058_RS07670 at 166.198 kb on + strand, within HMPREF1058_RS07670 at 166.276 kb on + strand, within HMPREF1058_RS07670 at 167.121 kb on + strand at 167.217 kb on + strand at 167.241 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 164,798 - HMPREF1058_RS07675 0.71 +0.4 164,798 - HMPREF1058_RS07675 0.71 -0.6 164,824 + HMPREF1058_RS07675 0.72 -0.8 164,826 + HMPREF1058_RS07675 0.72 -0.3 164,876 + HMPREF1058_RS07675 0.74 -0.8 164,877 - HMPREF1058_RS07675 0.74 -1.1 165,021 - HMPREF1058_RS07675 0.81 -0.7 165,114 + HMPREF1058_RS07675 0.85 -0.6 165,115 - HMPREF1058_RS07675 0.85 +1.2 165,115 - HMPREF1058_RS07675 0.85 +1.6 165,624 + +0.2 165,720 + +1.0 165,758 + +0.5 165,871 + HMPREF1058_RS07670 0.11 -1.7 165,979 + HMPREF1058_RS07670 0.18 -0.3 166,198 + HMPREF1058_RS07670 0.32 -0.3 166,276 + HMPREF1058_RS07670 0.37 +3.0 167,121 + -0.8 167,217 + +0.6 167,241 + +0.4
Or see this region's nucleotide sequence