Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07190

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07200 and HMPREF1058_RS07195 overlap by 4 nucleotidesHMPREF1058_RS07195 and HMPREF1058_RS07190 are separated by 12 nucleotidesHMPREF1058_RS07190 and HMPREF1058_RS07185 are separated by 38 nucleotides HMPREF1058_RS07200: HMPREF1058_RS07200 - tryptophan synthase subunit alpha, at 290,212 to 290,988 _RS07200 HMPREF1058_RS07195: HMPREF1058_RS07195 - phosphoribosylanthranilate isomerase, at 290,985 to 291,602 _RS07195 HMPREF1058_RS07190: HMPREF1058_RS07190 - indole-3-glycerol phosphate synthase TrpC, at 291,615 to 292,403 _RS07190 HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437 _RS07185 Position (kb) 291 292 293Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 290.723 kb on - strand, within HMPREF1058_RS07200at 290.863 kb on - strand, within HMPREF1058_RS07200at 290.908 kb on + strand, within HMPREF1058_RS07200at 290.908 kb on + strand, within HMPREF1058_RS07200at 291.015 kb on - strandat 291.173 kb on - strand, within HMPREF1058_RS07195at 291.248 kb on - strand, within HMPREF1058_RS07195at 291.257 kb on + strand, within HMPREF1058_RS07195at 291.340 kb on - strand, within HMPREF1058_RS07195at 291.384 kb on - strand, within HMPREF1058_RS07195at 291.496 kb on + strand, within HMPREF1058_RS07195at 291.589 kb on - strandat 291.638 kb on + strandat 291.877 kb on - strand, within HMPREF1058_RS07190at 291.877 kb on - strand, within HMPREF1058_RS07190at 291.879 kb on - strand, within HMPREF1058_RS07190at 291.879 kb on - strand, within HMPREF1058_RS07190at 291.879 kb on - strand, within HMPREF1058_RS07190at 291.880 kb on + strand, within HMPREF1058_RS07190at 291.881 kb on - strand, within HMPREF1058_RS07190at 292.041 kb on + strand, within HMPREF1058_RS07190at 292.042 kb on - strand, within HMPREF1058_RS07190at 292.185 kb on - strand, within HMPREF1058_RS07190at 292.393 kb on - strandat 292.393 kb on - strandat 292.557 kb on - strandat 292.557 kb on - strand, within HMPREF1058_RS07185at 292.698 kb on - strand, within HMPREF1058_RS07185at 292.834 kb on - strand, within HMPREF1058_RS07185at 292.920 kb on - strand, within HMPREF1058_RS07185at 292.924 kb on + strand, within HMPREF1058_RS07185at 292.928 kb on + strand, within HMPREF1058_RS07185at 292.929 kb on - strand, within HMPREF1058_RS07185at 292.929 kb on - strand, within HMPREF1058_RS07185at 292.929 kb on - strand, within HMPREF1058_RS07185at 292.995 kb on + strand, within HMPREF1058_RS07185at 292.995 kb on - strand, within HMPREF1058_RS07185at 292.996 kb on - strand, within HMPREF1058_RS07185at 292.996 kb on - strand, within HMPREF1058_RS07185at 293.106 kb on + strand, within HMPREF1058_RS07185at 293.164 kb on + strand, within HMPREF1058_RS07185at 293.180 kb on - strand, within HMPREF1058_RS07185at 293.237 kb on + strand, within HMPREF1058_RS07185at 293.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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290,723 - HMPREF1058_RS07200 0.66 -4.1
290,863 - HMPREF1058_RS07200 0.84 -3.5
290,908 + HMPREF1058_RS07200 0.90 -4.7
290,908 + HMPREF1058_RS07200 0.90 -4.6
291,015 - -1.0
291,173 - HMPREF1058_RS07195 0.30 -4.2
291,248 - HMPREF1058_RS07195 0.43 -2.1
291,257 + HMPREF1058_RS07195 0.44 -2.1
291,340 - HMPREF1058_RS07195 0.57 -1.1
291,384 - HMPREF1058_RS07195 0.65 -2.4
291,496 + HMPREF1058_RS07195 0.83 +0.7
291,589 - -4.3
291,638 + -2.6
291,877 - HMPREF1058_RS07190 0.33 +1.6
291,877 - HMPREF1058_RS07190 0.33 -2.4
291,879 - HMPREF1058_RS07190 0.33 -3.3
291,879 - HMPREF1058_RS07190 0.33 -1.9
291,879 - HMPREF1058_RS07190 0.33 -2.6
291,880 + HMPREF1058_RS07190 0.34 -3.8
291,881 - HMPREF1058_RS07190 0.34 -3.7
292,041 + HMPREF1058_RS07190 0.54 -3.1
292,042 - HMPREF1058_RS07190 0.54 -3.7
292,185 - HMPREF1058_RS07190 0.72 -4.0
292,393 - -4.3
292,393 - -4.9
292,557 - -0.8
292,557 - HMPREF1058_RS07185 0.12 -2.7
292,698 - HMPREF1058_RS07185 0.26 -4.1
292,834 - HMPREF1058_RS07185 0.39 -4.1
292,920 - HMPREF1058_RS07185 0.48 -2.0
292,924 + HMPREF1058_RS07185 0.48 -1.6
292,928 + HMPREF1058_RS07185 0.49 -3.0
292,929 - HMPREF1058_RS07185 0.49 -4.7
292,929 - HMPREF1058_RS07185 0.49 -2.4
292,929 - HMPREF1058_RS07185 0.49 -2.8
292,995 + HMPREF1058_RS07185 0.56 -2.1
292,995 - HMPREF1058_RS07185 0.56 -0.3
292,996 - HMPREF1058_RS07185 0.56 -5.1
292,996 - HMPREF1058_RS07185 0.56 -3.4
293,106 + HMPREF1058_RS07185 0.67 -2.5
293,164 + HMPREF1058_RS07185 0.72 -2.1
293,180 - HMPREF1058_RS07185 0.74 -1.7
293,237 + HMPREF1058_RS07185 0.80 -1.6
293,346 + -1.9

Or see this region's nucleotide sequence