Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07070 and HMPREF1058_RS07065 are separated by 332 nucleotides HMPREF1058_RS07065 and HMPREF1058_RS07060 are separated by 43 nucleotides HMPREF1058_RS07060 and HMPREF1058_RS07055 are separated by 10 nucleotides
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
HMPREF1058_RS07065: HMPREF1058_RS07065 - OmpA family protein, at 324,290 to 325,384
_RS07065
HMPREF1058_RS07060: HMPREF1058_RS07060 - DUF3869 domain-containing protein, at 325,428 to 326,276
_RS07060
HMPREF1058_RS07055: HMPREF1058_RS07055 - hypothetical protein, at 326,287 to 327,525
_RS07055
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070 at 323.922 kb on - strand at 323.965 kb on + strand at 323.965 kb on + strand at 323.966 kb on - strand at 324.002 kb on + strand at 324.004 kb on + strand at 324.004 kb on + strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.005 kb on - strand at 324.006 kb on + strand at 324.007 kb on - strand at 324.007 kb on - strand at 324.027 kb on + strand at 324.027 kb on + strand at 324.041 kb on - strand at 324.042 kb on + strand at 324.042 kb on + strand at 324.043 kb on - strand at 324.045 kb on - strand at 324.045 kb on - strand at 324.056 kb on - strand at 324.140 kb on + strand at 324.140 kb on + strand at 324.141 kb on - strand at 324.193 kb on - strand at 324.242 kb on - strand at 324.308 kb on - strand at 324.325 kb on - strand at 324.412 kb on - strand, within HMPREF1058_RS07065 at 324.495 kb on + strand, within HMPREF1058_RS07065 at 324.540 kb on - strand, within HMPREF1058_RS07065 at 324.544 kb on + strand, within HMPREF1058_RS07065 at 324.550 kb on + strand, within HMPREF1058_RS07065 at 324.551 kb on - strand, within HMPREF1058_RS07065 at 324.592 kb on + strand, within HMPREF1058_RS07065 at 324.639 kb on - strand, within HMPREF1058_RS07065 at 324.687 kb on - strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.732 kb on + strand, within HMPREF1058_RS07065 at 324.737 kb on + strand, within HMPREF1058_RS07065 at 324.738 kb on - strand, within HMPREF1058_RS07065 at 324.761 kb on - strand, within HMPREF1058_RS07065 at 324.844 kb on + strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.845 kb on - strand, within HMPREF1058_RS07065 at 324.890 kb on - strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.919 kb on + strand, within HMPREF1058_RS07065 at 324.954 kb on + strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.955 kb on - strand, within HMPREF1058_RS07065 at 324.958 kb on + strand, within HMPREF1058_RS07065 at 325.001 kb on + strand, within HMPREF1058_RS07065 at 325.064 kb on + strand, within HMPREF1058_RS07065 at 325.064 kb on + strand, within HMPREF1058_RS07065 at 325.092 kb on + strand, within HMPREF1058_RS07065 at 325.093 kb on - strand, within HMPREF1058_RS07065 at 325.128 kb on - strand, within HMPREF1058_RS07065 at 325.133 kb on + strand, within HMPREF1058_RS07065 at 325.145 kb on + strand, within HMPREF1058_RS07065 at 325.186 kb on + strand, within HMPREF1058_RS07065 at 325.253 kb on + strand, within HMPREF1058_RS07065 at 325.253 kb on + strand, within HMPREF1058_RS07065 at 325.266 kb on - strand, within HMPREF1058_RS07065 at 325.301 kb on - strand at 325.301 kb on - strand at 325.341 kb on - strand at 325.405 kb on + strand at 325.442 kb on + strand at 325.443 kb on - strand at 325.542 kb on - strand, within HMPREF1058_RS07060 at 325.547 kb on + strand, within HMPREF1058_RS07060 at 325.639 kb on + strand, within HMPREF1058_RS07060 at 325.656 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.681 kb on - strand, within HMPREF1058_RS07060 at 325.689 kb on + strand, within HMPREF1058_RS07060 at 325.734 kb on - strand, within HMPREF1058_RS07060 at 325.777 kb on - strand, within HMPREF1058_RS07060 at 325.804 kb on + strand, within HMPREF1058_RS07060 at 325.819 kb on + strand, within HMPREF1058_RS07060 at 325.820 kb on - strand, within HMPREF1058_RS07060 at 325.863 kb on - strand, within HMPREF1058_RS07060 at 325.873 kb on - strand, within HMPREF1058_RS07060 at 325.926 kb on - strand, within HMPREF1058_RS07060 at 325.928 kb on + strand, within HMPREF1058_RS07060 at 325.974 kb on - strand, within HMPREF1058_RS07060 at 326.003 kb on - strand, within HMPREF1058_RS07060 at 326.014 kb on - strand, within HMPREF1058_RS07060 at 326.016 kb on - strand, within HMPREF1058_RS07060 at 326.034 kb on + strand, within HMPREF1058_RS07060 at 326.035 kb on - strand, within HMPREF1058_RS07060 at 326.098 kb on - strand, within HMPREF1058_RS07060 at 326.221 kb on - strand at 326.223 kb on + strand at 326.240 kb on + strand at 326.334 kb on + strand at 326.335 kb on - strand at 326.368 kb on - strand at 326.369 kb on + strand at 326.370 kb on - strand at 326.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 323,338 + HMPREF1058_RS07070 0.35 +2.0 323,353 + HMPREF1058_RS07070 0.37 +1.2 323,369 + HMPREF1058_RS07070 0.39 +1.1 323,369 + HMPREF1058_RS07070 0.39 +0.3 323,372 + HMPREF1058_RS07070 0.39 -1.8 323,397 + HMPREF1058_RS07070 0.42 +0.4 323,408 + HMPREF1058_RS07070 0.43 +0.0 323,408 + HMPREF1058_RS07070 0.43 +1.1 323,502 + HMPREF1058_RS07070 0.53 -0.1 323,510 - HMPREF1058_RS07070 0.53 -0.2 323,534 + HMPREF1058_RS07070 0.56 +0.4 323,616 - HMPREF1058_RS07070 0.64 -0.3 323,709 - HMPREF1058_RS07070 0.74 +0.4 323,709 - HMPREF1058_RS07070 0.74 +0.0 323,712 + HMPREF1058_RS07070 0.74 +0.1 323,713 - HMPREF1058_RS07070 0.74 +0.6 323,725 - HMPREF1058_RS07070 0.76 +0.4 323,725 - HMPREF1058_RS07070 0.76 +0.7 323,732 + HMPREF1058_RS07070 0.76 +0.2 323,733 - HMPREF1058_RS07070 0.77 -1.0 323,733 - HMPREF1058_RS07070 0.77 -0.4 323,798 + HMPREF1058_RS07070 0.83 -0.3 323,798 + HMPREF1058_RS07070 0.83 -0.6 323,799 - HMPREF1058_RS07070 0.83 -1.0 323,858 + HMPREF1058_RS07070 0.90 +0.8 323,922 - +0.4 323,965 + -0.2 323,965 + -1.0 323,966 - -0.0 324,002 + -0.0 324,004 + +0.2 324,004 + -0.2 324,005 - +0.3 324,005 - +3.2 324,005 - -1.3 324,006 + -0.2 324,007 - +0.6 324,007 - +0.4 324,027 + +0.5 324,027 + -0.5 324,041 - +0.1 324,042 + -0.7 324,042 + +1.3 324,043 - -0.0 324,045 - -0.6 324,045 - +0.5 324,056 - -0.0 324,140 + +0.1 324,140 + +0.9 324,141 - +2.0 324,193 - +0.4 324,242 - -2.6 324,308 - -1.7 324,325 - -0.0 324,412 - HMPREF1058_RS07065 0.11 -0.0 324,495 + HMPREF1058_RS07065 0.19 -0.6 324,540 - HMPREF1058_RS07065 0.23 +0.6 324,544 + HMPREF1058_RS07065 0.23 -1.6 324,550 + HMPREF1058_RS07065 0.24 -0.9 324,551 - HMPREF1058_RS07065 0.24 -0.8 324,592 + HMPREF1058_RS07065 0.28 -1.5 324,639 - HMPREF1058_RS07065 0.32 -0.6 324,687 - HMPREF1058_RS07065 0.36 -1.1 324,732 + HMPREF1058_RS07065 0.40 +0.2 324,732 + HMPREF1058_RS07065 0.40 -1.3 324,737 + HMPREF1058_RS07065 0.41 +1.7 324,738 - HMPREF1058_RS07065 0.41 +0.7 324,761 - HMPREF1058_RS07065 0.43 +1.5 324,844 + HMPREF1058_RS07065 0.51 +2.0 324,845 - HMPREF1058_RS07065 0.51 +0.7 324,845 - HMPREF1058_RS07065 0.51 +3.0 324,890 - HMPREF1058_RS07065 0.55 -0.0 324,919 + HMPREF1058_RS07065 0.57 +1.3 324,919 + HMPREF1058_RS07065 0.57 -0.7 324,954 + HMPREF1058_RS07065 0.61 -0.4 324,955 - HMPREF1058_RS07065 0.61 +0.4 324,955 - HMPREF1058_RS07065 0.61 -1.0 324,958 + HMPREF1058_RS07065 0.61 -0.0 325,001 + HMPREF1058_RS07065 0.65 -0.3 325,064 + HMPREF1058_RS07065 0.71 +2.0 325,064 + HMPREF1058_RS07065 0.71 +0.4 325,092 + HMPREF1058_RS07065 0.73 -0.3 325,093 - HMPREF1058_RS07065 0.73 -1.1 325,128 - HMPREF1058_RS07065 0.77 +0.3 325,133 + HMPREF1058_RS07065 0.77 -0.8 325,145 + HMPREF1058_RS07065 0.78 +2.0 325,186 + HMPREF1058_RS07065 0.82 -0.0 325,253 + HMPREF1058_RS07065 0.88 -0.0 325,253 + HMPREF1058_RS07065 0.88 -0.3 325,266 - HMPREF1058_RS07065 0.89 -0.1 325,301 - +0.2 325,301 - +1.6 325,341 - +1.0 325,405 + -0.6 325,442 + +0.4 325,443 - -2.5 325,542 - HMPREF1058_RS07060 0.13 -1.2 325,547 + HMPREF1058_RS07060 0.14 +1.4 325,639 + HMPREF1058_RS07060 0.25 -1.3 325,656 - HMPREF1058_RS07060 0.27 -0.0 325,681 - HMPREF1058_RS07060 0.30 +0.7 325,681 - HMPREF1058_RS07060 0.30 -0.7 325,689 + HMPREF1058_RS07060 0.31 -0.4 325,734 - HMPREF1058_RS07060 0.36 -1.2 325,777 - HMPREF1058_RS07060 0.41 -1.6 325,804 + HMPREF1058_RS07060 0.44 -0.5 325,819 + HMPREF1058_RS07060 0.46 -0.3 325,820 - HMPREF1058_RS07060 0.46 +1.0 325,863 - HMPREF1058_RS07060 0.51 -0.5 325,873 - HMPREF1058_RS07060 0.52 -0.0 325,926 - HMPREF1058_RS07060 0.59 -1.8 325,928 + HMPREF1058_RS07060 0.59 -1.3 325,974 - HMPREF1058_RS07060 0.64 -2.5 326,003 - HMPREF1058_RS07060 0.68 -2.2 326,014 - HMPREF1058_RS07060 0.69 -0.2 326,016 - HMPREF1058_RS07060 0.69 -1.3 326,034 + HMPREF1058_RS07060 0.71 +2.0 326,035 - HMPREF1058_RS07060 0.71 +1.0 326,098 - HMPREF1058_RS07060 0.79 -1.3 326,221 - -0.6 326,223 + +1.5 326,240 + +1.3 326,334 + +1.0 326,335 - -0.2 326,368 - -1.6 326,369 + +0.4 326,370 - -0.2 326,382 - +0.2
Or see this region's nucleotide sequence