Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07050 and HMPREF1058_RS07045 are separated by 23 nucleotides HMPREF1058_RS07045 and HMPREF1058_RS07040 are separated by 72 nucleotides HMPREF1058_RS07040 and HMPREF1058_RS07035 are separated by 80 nucleotides
HMPREF1058_RS07050: HMPREF1058_RS07050 - Holliday junction resolvase RuvX, at 327,732 to 328,151
_RS07050
HMPREF1058_RS07045: HMPREF1058_RS07045 - peptide deformylase, at 328,175 to 328,729
_RS07045
HMPREF1058_RS07040: HMPREF1058_RS07040 - tetratricopeptide repeat protein, at 328,802 to 330,811
_RS07040
HMPREF1058_RS07035: HMPREF1058_RS07035 - threonine--tRNA ligase, at 330,892 to 332,832
_RS07035
Position (kb) 328
329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.143 kb on + strand at 328.749 kb on + strand at 328.750 kb on - strand at 328.750 kb on - strand at 328.793 kb on - strand at 328.793 kb on - strand at 328.820 kb on + strand at 328.821 kb on - strand at 328.823 kb on - strand at 328.823 kb on - strand at 328.827 kb on + strand at 328.827 kb on + strand at 328.828 kb on - strand at 328.830 kb on + strand at 328.863 kb on + strand at 328.904 kb on + strand at 328.905 kb on - strand at 328.916 kb on + strand at 328.917 kb on - strand at 328.917 kb on - strand at 328.964 kb on + strand at 328.985 kb on + strand at 329.050 kb on + strand, within HMPREF1058_RS07040 at 329.073 kb on + strand, within HMPREF1058_RS07040 at 329.116 kb on + strand, within HMPREF1058_RS07040 at 329.133 kb on + strand, within HMPREF1058_RS07040 at 329.143 kb on + strand, within HMPREF1058_RS07040 at 329.144 kb on - strand, within HMPREF1058_RS07040 at 329.144 kb on - strand, within HMPREF1058_RS07040 at 329.176 kb on - strand, within HMPREF1058_RS07040 at 329.176 kb on - strand, within HMPREF1058_RS07040 at 329.176 kb on - strand, within HMPREF1058_RS07040 at 329.188 kb on + strand, within HMPREF1058_RS07040 at 329.188 kb on + strand, within HMPREF1058_RS07040 at 329.188 kb on + strand, within HMPREF1058_RS07040 at 329.222 kb on + strand, within HMPREF1058_RS07040 at 329.222 kb on + strand, within HMPREF1058_RS07040 at 329.275 kb on + strand, within HMPREF1058_RS07040 at 329.276 kb on - strand, within HMPREF1058_RS07040 at 329.324 kb on - strand, within HMPREF1058_RS07040 at 329.383 kb on + strand, within HMPREF1058_RS07040 at 329.383 kb on + strand, within HMPREF1058_RS07040 at 329.384 kb on - strand, within HMPREF1058_RS07040 at 329.427 kb on - strand, within HMPREF1058_RS07040 at 329.429 kb on - strand, within HMPREF1058_RS07040 at 329.492 kb on - strand, within HMPREF1058_RS07040 at 329.623 kb on - strand, within HMPREF1058_RS07040 at 329.732 kb on + strand, within HMPREF1058_RS07040 at 329.732 kb on + strand, within HMPREF1058_RS07040 at 329.734 kb on + strand, within HMPREF1058_RS07040 at 329.735 kb on - strand, within HMPREF1058_RS07040 at 329.827 kb on - strand, within HMPREF1058_RS07040 at 329.935 kb on + strand, within HMPREF1058_RS07040 at 329.938 kb on + strand, within HMPREF1058_RS07040 at 329.938 kb on + strand, within HMPREF1058_RS07040 at 329.975 kb on + strand, within HMPREF1058_RS07040 at 329.980 kb on + strand, within HMPREF1058_RS07040 at 329.981 kb on - strand, within HMPREF1058_RS07040 at 330.021 kb on - strand, within HMPREF1058_RS07040 at 330.095 kb on + strand, within HMPREF1058_RS07040 at 330.096 kb on - strand, within HMPREF1058_RS07040 at 330.140 kb on - strand, within HMPREF1058_RS07040 at 330.172 kb on - strand, within HMPREF1058_RS07040 at 330.229 kb on + strand, within HMPREF1058_RS07040 at 330.374 kb on - strand, within HMPREF1058_RS07040 at 330.374 kb on - strand, within HMPREF1058_RS07040 at 330.425 kb on + strand, within HMPREF1058_RS07040 at 330.427 kb on + strand, within HMPREF1058_RS07040 at 330.569 kb on + strand, within HMPREF1058_RS07040 at 330.576 kb on - strand, within HMPREF1058_RS07040 at 330.579 kb on - strand, within HMPREF1058_RS07040 at 330.580 kb on + strand, within HMPREF1058_RS07040 at 330.581 kb on - strand, within HMPREF1058_RS07040 at 330.584 kb on - strand, within HMPREF1058_RS07040 at 330.615 kb on - strand at 330.636 kb on - strand at 330.677 kb on + strand at 330.728 kb on - strand at 330.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 328,143 + +1.2 328,749 + +0.1 328,750 - -1.2 328,750 - -0.2 328,793 - -1.3 328,793 - +0.3 328,820 + -1.1 328,821 - -1.6 328,823 - -1.4 328,823 - -1.3 328,827 + -0.2 328,827 + +0.9 328,828 - +0.2 328,830 + +0.5 328,863 + -2.1 328,904 + +0.1 328,905 - -0.6 328,916 + -0.8 328,917 - -1.5 328,917 - -2.2 328,964 + -0.2 328,985 + +0.4 329,050 + HMPREF1058_RS07040 0.12 -1.6 329,073 + HMPREF1058_RS07040 0.13 +0.7 329,116 + HMPREF1058_RS07040 0.16 +0.1 329,133 + HMPREF1058_RS07040 0.16 +1.0 329,143 + HMPREF1058_RS07040 0.17 -2.3 329,144 - HMPREF1058_RS07040 0.17 +0.3 329,144 - HMPREF1058_RS07040 0.17 -1.1 329,176 - HMPREF1058_RS07040 0.19 +2.2 329,176 - HMPREF1058_RS07040 0.19 +0.1 329,176 - HMPREF1058_RS07040 0.19 -1.2 329,188 + HMPREF1058_RS07040 0.19 -1.9 329,188 + HMPREF1058_RS07040 0.19 -0.9 329,188 + HMPREF1058_RS07040 0.19 -1.3 329,222 + HMPREF1058_RS07040 0.21 +2.0 329,222 + HMPREF1058_RS07040 0.21 -0.6 329,275 + HMPREF1058_RS07040 0.24 -0.8 329,276 - HMPREF1058_RS07040 0.24 -0.8 329,324 - HMPREF1058_RS07040 0.26 -1.2 329,383 + HMPREF1058_RS07040 0.29 -1.1 329,383 + HMPREF1058_RS07040 0.29 -0.4 329,384 - HMPREF1058_RS07040 0.29 -0.7 329,427 - HMPREF1058_RS07040 0.31 -1.1 329,429 - HMPREF1058_RS07040 0.31 -1.0 329,492 - HMPREF1058_RS07040 0.34 -0.5 329,623 - HMPREF1058_RS07040 0.41 -1.5 329,732 + HMPREF1058_RS07040 0.46 -1.2 329,732 + HMPREF1058_RS07040 0.46 -1.5 329,734 + HMPREF1058_RS07040 0.46 -1.0 329,735 - HMPREF1058_RS07040 0.46 -1.2 329,827 - HMPREF1058_RS07040 0.51 -2.2 329,935 + HMPREF1058_RS07040 0.56 -0.1 329,938 + HMPREF1058_RS07040 0.57 -0.8 329,938 + HMPREF1058_RS07040 0.57 -1.9 329,975 + HMPREF1058_RS07040 0.58 +2.0 329,980 + HMPREF1058_RS07040 0.59 +1.0 329,981 - HMPREF1058_RS07040 0.59 -0.7 330,021 - HMPREF1058_RS07040 0.61 -0.1 330,095 + HMPREF1058_RS07040 0.64 -1.5 330,096 - HMPREF1058_RS07040 0.64 -0.0 330,140 - HMPREF1058_RS07040 0.67 -2.0 330,172 - HMPREF1058_RS07040 0.68 -0.8 330,229 + HMPREF1058_RS07040 0.71 -1.3 330,374 - HMPREF1058_RS07040 0.78 -1.3 330,374 - HMPREF1058_RS07040 0.78 -0.0 330,425 + HMPREF1058_RS07040 0.81 -1.0 330,427 + HMPREF1058_RS07040 0.81 -0.9 330,569 + HMPREF1058_RS07040 0.88 -0.2 330,576 - HMPREF1058_RS07040 0.88 -0.5 330,579 - HMPREF1058_RS07040 0.88 -1.1 330,580 + HMPREF1058_RS07040 0.88 -1.5 330,581 - HMPREF1058_RS07040 0.89 -0.7 330,584 - HMPREF1058_RS07040 0.89 -1.8 330,615 - +1.4 330,636 - -1.2 330,677 + -0.8 330,728 - -1.3 330,779 - -0.6
Or see this region's nucleotide sequence