Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06565 and HMPREF1058_RS06560 are separated by 401 nucleotides HMPREF1058_RS06560 and HMPREF1058_RS06555 are separated by 110 nucleotides HMPREF1058_RS06555 and HMPREF1058_RS06550 overlap by 8 nucleotides
HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635
_RS06565
HMPREF1058_RS06560: HMPREF1058_RS06560 - carboxypeptidase-like regulatory domain-containing protein, at 449,037 to 451,610
_RS06560
HMPREF1058_RS06555: HMPREF1058_RS06555 - nucleotidyltransferase domain-containing protein, at 451,721 to 452,014
_RS06555
HMPREF1058_RS06550: HMPREF1058_RS06550 - DUF86 domain-containing protein, at 452,007 to 452,381
_RS06550
Position (kb) 449
450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 448.142 kb on - strand, within HMPREF1058_RS06565 at 448.190 kb on + strand, within HMPREF1058_RS06565 at 448.296 kb on + strand, within HMPREF1058_RS06565 at 448.299 kb on - strand, within HMPREF1058_RS06565 at 448.532 kb on + strand, within HMPREF1058_RS06565 at 448.533 kb on - strand, within HMPREF1058_RS06565 at 448.598 kb on + strand at 448.654 kb on - strand at 448.673 kb on - strand at 448.674 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand at 448.841 kb on + strand at 448.841 kb on + strand at 448.972 kb on + strand at 448.972 kb on + strand at 449.001 kb on + strand at 449.017 kb on + strand at 449.049 kb on + strand at 449.049 kb on + strand at 449.068 kb on + strand at 449.081 kb on - strand at 449.271 kb on + strand at 449.272 kb on - strand at 449.291 kb on + strand at 449.292 kb on - strand at 449.293 kb on + strand at 449.385 kb on + strand, within HMPREF1058_RS06560 at 449.399 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.473 kb on - strand, within HMPREF1058_RS06560 at 449.483 kb on + strand, within HMPREF1058_RS06560 at 449.484 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.615 kb on + strand, within HMPREF1058_RS06560 at 449.822 kb on + strand, within HMPREF1058_RS06560 at 449.859 kb on + strand, within HMPREF1058_RS06560 at 449.860 kb on - strand, within HMPREF1058_RS06560 at 449.976 kb on + strand, within HMPREF1058_RS06560 at 449.978 kb on + strand, within HMPREF1058_RS06560 at 450.314 kb on + strand, within HMPREF1058_RS06560 at 450.354 kb on + strand, within HMPREF1058_RS06560 at 450.461 kb on + strand, within HMPREF1058_RS06560 at 450.465 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.576 kb on + strand, within HMPREF1058_RS06560 at 450.579 kb on - strand, within HMPREF1058_RS06560 at 450.579 kb on - strand, within HMPREF1058_RS06560 at 450.594 kb on + strand, within HMPREF1058_RS06560 at 450.664 kb on - strand, within HMPREF1058_RS06560 at 450.757 kb on - strand, within HMPREF1058_RS06560 at 450.757 kb on - strand, within HMPREF1058_RS06560 at 450.863 kb on + strand, within HMPREF1058_RS06560 at 451.005 kb on - strand, within HMPREF1058_RS06560 at 451.050 kb on + strand, within HMPREF1058_RS06560 at 451.057 kb on - strand, within HMPREF1058_RS06560 at 451.110 kb on - strand, within HMPREF1058_RS06560 at 451.194 kb on + strand, within HMPREF1058_RS06560 at 451.194 kb on + strand, within HMPREF1058_RS06560 at 451.195 kb on - strand, within HMPREF1058_RS06560 at 451.229 kb on + strand, within HMPREF1058_RS06560 at 451.229 kb on + strand, within HMPREF1058_RS06560 at 451.230 kb on - strand, within HMPREF1058_RS06560 at 451.230 kb on - strand, within HMPREF1058_RS06560 at 451.271 kb on - strand, within HMPREF1058_RS06560 at 451.517 kb on - strand at 451.525 kb on + strand at 451.526 kb on - strand at 451.530 kb on + strand at 451.530 kb on + strand at 451.656 kb on + strand at 451.726 kb on - strand at 451.742 kb on - strand at 451.874 kb on - strand, within HMPREF1058_RS06555 at 451.874 kb on - strand, within HMPREF1058_RS06555 at 451.892 kb on - strand, within HMPREF1058_RS06555 at 452.006 kb on + strand at 452.006 kb on + strand at 452.006 kb on + strand at 452.007 kb on - strand at 452.007 kb on - strand at 452.010 kb on + strand at 452.067 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.173 kb on + strand, within HMPREF1058_RS06550 at 452.204 kb on - strand, within HMPREF1058_RS06550 at 452.226 kb on + strand, within HMPREF1058_RS06550 at 452.226 kb on + strand, within HMPREF1058_RS06550 at 452.228 kb on + strand, within HMPREF1058_RS06550 at 452.250 kb on - strand, within HMPREF1058_RS06550 at 452.250 kb on - strand, within HMPREF1058_RS06550 at 452.253 kb on + strand, within HMPREF1058_RS06550 at 452.254 kb on - strand, within HMPREF1058_RS06550 at 452.254 kb on - strand, within HMPREF1058_RS06550 at 452.258 kb on + strand, within HMPREF1058_RS06550 at 452.258 kb on + strand, within HMPREF1058_RS06550 at 452.288 kb on + strand, within HMPREF1058_RS06550 at 452.288 kb on + strand, within HMPREF1058_RS06550 at 452.289 kb on - strand, within HMPREF1058_RS06550 at 452.306 kb on - strand, within HMPREF1058_RS06550 at 452.308 kb on + strand, within HMPREF1058_RS06550 at 452.312 kb on + strand, within HMPREF1058_RS06550 at 452.312 kb on + strand, within HMPREF1058_RS06550 at 452.313 kb on - strand, within HMPREF1058_RS06550 at 452.319 kb on - strand, within HMPREF1058_RS06550 at 452.335 kb on + strand, within HMPREF1058_RS06550 at 452.336 kb on - strand, within HMPREF1058_RS06550 at 452.369 kb on + strand at 452.413 kb on + strand at 452.475 kb on + strand at 452.486 kb on + strand at 452.518 kb on + strand at 452.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 448,142 - HMPREF1058_RS06565 0.30 -0.6 448,190 + HMPREF1058_RS06565 0.36 -0.7 448,296 + HMPREF1058_RS06565 0.52 +0.2 448,299 - HMPREF1058_RS06565 0.52 -0.5 448,532 + HMPREF1058_RS06565 0.85 -0.5 448,533 - HMPREF1058_RS06565 0.85 +0.5 448,598 + -0.3 448,654 - +0.3 448,673 - -2.8 448,674 + +0.3 448,676 + -0.3 448,676 + -0.2 448,841 + -2.2 448,841 + -2.5 448,972 + +0.5 448,972 + +0.2 449,001 + -1.4 449,017 + -0.3 449,049 + -1.3 449,049 + +0.0 449,068 + +1.7 449,081 - -0.9 449,271 + -1.5 449,272 - -0.6 449,291 + -0.7 449,292 - -0.2 449,293 + -0.8 449,385 + HMPREF1058_RS06560 0.14 -0.2 449,399 + HMPREF1058_RS06560 0.14 -1.0 449,472 + HMPREF1058_RS06560 0.17 -1.5 449,472 + HMPREF1058_RS06560 0.17 -0.9 449,473 - HMPREF1058_RS06560 0.17 +0.0 449,483 + HMPREF1058_RS06560 0.17 +1.0 449,484 - HMPREF1058_RS06560 0.17 -2.0 449,548 - HMPREF1058_RS06560 0.20 +0.4 449,548 - HMPREF1058_RS06560 0.20 +0.4 449,548 - HMPREF1058_RS06560 0.20 +0.4 449,615 + HMPREF1058_RS06560 0.22 +0.0 449,822 + HMPREF1058_RS06560 0.30 +1.4 449,859 + HMPREF1058_RS06560 0.32 +0.6 449,860 - HMPREF1058_RS06560 0.32 +0.6 449,976 + HMPREF1058_RS06560 0.36 -0.3 449,978 + HMPREF1058_RS06560 0.37 +0.3 450,314 + HMPREF1058_RS06560 0.50 +0.6 450,354 + HMPREF1058_RS06560 0.51 -0.8 450,461 + HMPREF1058_RS06560 0.55 +0.4 450,465 + HMPREF1058_RS06560 0.55 +2.4 450,543 + HMPREF1058_RS06560 0.59 -1.5 450,543 + HMPREF1058_RS06560 0.59 -0.7 450,543 + HMPREF1058_RS06560 0.59 -2.0 450,543 + HMPREF1058_RS06560 0.59 -1.0 450,576 + HMPREF1058_RS06560 0.60 -1.0 450,579 - HMPREF1058_RS06560 0.60 -1.0 450,579 - HMPREF1058_RS06560 0.60 +2.0 450,594 + HMPREF1058_RS06560 0.60 +1.0 450,664 - HMPREF1058_RS06560 0.63 -0.8 450,757 - HMPREF1058_RS06560 0.67 -0.3 450,757 - HMPREF1058_RS06560 0.67 +0.0 450,863 + HMPREF1058_RS06560 0.71 +1.7 451,005 - HMPREF1058_RS06560 0.76 +0.0 451,050 + HMPREF1058_RS06560 0.78 +2.0 451,057 - HMPREF1058_RS06560 0.78 -0.8 451,110 - HMPREF1058_RS06560 0.81 +1.4 451,194 + HMPREF1058_RS06560 0.84 -2.3 451,194 + HMPREF1058_RS06560 0.84 -0.3 451,195 - HMPREF1058_RS06560 0.84 -2.1 451,229 + HMPREF1058_RS06560 0.85 +1.0 451,229 + HMPREF1058_RS06560 0.85 -1.2 451,230 - HMPREF1058_RS06560 0.85 +0.2 451,230 - HMPREF1058_RS06560 0.85 +0.4 451,271 - HMPREF1058_RS06560 0.87 +2.0 451,517 - -0.6 451,525 + -0.3 451,526 - -3.2 451,530 + +0.8 451,530 + +2.0 451,656 + +0.5 451,726 - +1.3 451,742 - -1.0 451,874 - HMPREF1058_RS06555 0.52 -0.6 451,874 - HMPREF1058_RS06555 0.52 +0.4 451,892 - HMPREF1058_RS06555 0.58 +1.1 452,006 + -0.2 452,006 + -0.7 452,006 + -0.3 452,007 - +0.0 452,007 - -1.7 452,010 + +0.7 452,067 + HMPREF1058_RS06550 0.16 -0.2 452,074 + HMPREF1058_RS06550 0.18 +0.6 452,074 + HMPREF1058_RS06550 0.18 -0.6 452,074 + HMPREF1058_RS06550 0.18 -0.7 452,075 - HMPREF1058_RS06550 0.18 -0.8 452,075 - HMPREF1058_RS06550 0.18 +0.0 452,075 - HMPREF1058_RS06550 0.18 +0.5 452,173 + HMPREF1058_RS06550 0.44 +0.2 452,204 - HMPREF1058_RS06550 0.53 +0.4 452,226 + HMPREF1058_RS06550 0.58 -0.1 452,226 + HMPREF1058_RS06550 0.58 -0.4 452,228 + HMPREF1058_RS06550 0.59 -0.8 452,250 - HMPREF1058_RS06550 0.65 -0.7 452,250 - HMPREF1058_RS06550 0.65 -0.9 452,253 + HMPREF1058_RS06550 0.66 -0.1 452,254 - HMPREF1058_RS06550 0.66 +0.6 452,254 - HMPREF1058_RS06550 0.66 +0.5 452,258 + HMPREF1058_RS06550 0.67 +0.2 452,258 + HMPREF1058_RS06550 0.67 -0.4 452,288 + HMPREF1058_RS06550 0.75 -0.8 452,288 + HMPREF1058_RS06550 0.75 +0.1 452,289 - HMPREF1058_RS06550 0.75 -1.2 452,306 - HMPREF1058_RS06550 0.80 -1.0 452,308 + HMPREF1058_RS06550 0.80 +0.3 452,312 + HMPREF1058_RS06550 0.81 -1.0 452,312 + HMPREF1058_RS06550 0.81 +0.5 452,313 - HMPREF1058_RS06550 0.82 +1.3 452,319 - HMPREF1058_RS06550 0.83 -0.3 452,335 + HMPREF1058_RS06550 0.87 -0.0 452,336 - HMPREF1058_RS06550 0.88 +0.3 452,369 + +0.0 452,413 + +0.1 452,475 + -0.4 452,486 + -0.5 452,518 + +0.1 452,532 - +0.5
Or see this region's nucleotide sequence