Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06335 and HMPREF1058_RS06330 overlap by 4 nucleotides HMPREF1058_RS06330 and HMPREF1058_RS06325 are separated by 14 nucleotides HMPREF1058_RS06325 and HMPREF1058_RS06320 are separated by 18 nucleotides
HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225
_RS06335
HMPREF1058_RS06330: HMPREF1058_RS06330 - RnfABCDGE type electron transport complex subunit G, at 505,222 to 506,016
_RS06330
HMPREF1058_RS06325: HMPREF1058_RS06325 - electron transport complex subunit E, at 506,031 to 506,615
_RS06325
HMPREF1058_RS06320: HMPREF1058_RS06320 - electron transport complex subunit RsxA, at 506,634 to 507,236
_RS06320
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 504.236 kb on - strand at 504.236 kb on - strand at 504.236 kb on - strand at 504.250 kb on - strand at 504.252 kb on + strand at 504.255 kb on + strand at 504.291 kb on + strand at 504.291 kb on + strand at 504.292 kb on - strand at 504.301 kb on + strand at 504.302 kb on - strand at 504.302 kb on - strand at 504.305 kb on + strand at 504.306 kb on - strand at 504.306 kb on - strand at 504.327 kb on + strand at 504.454 kb on + strand, within HMPREF1058_RS06335 at 504.478 kb on + strand, within HMPREF1058_RS06335 at 504.480 kb on + strand, within HMPREF1058_RS06335 at 504.481 kb on - strand, within HMPREF1058_RS06335 at 504.692 kb on + strand, within HMPREF1058_RS06335 at 504.715 kb on + strand, within HMPREF1058_RS06335 at 504.766 kb on - strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.819 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.901 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.054 kb on + strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.133 kb on - strand at 505.147 kb on - strand at 505.184 kb on + strand at 505.189 kb on + strand at 505.195 kb on + strand at 505.443 kb on + strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.452 kb on + strand, within HMPREF1058_RS06330 at 505.557 kb on + strand, within HMPREF1058_RS06330 at 505.558 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.627 kb on - strand, within HMPREF1058_RS06330 at 505.656 kb on + strand, within HMPREF1058_RS06330 at 505.685 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.780 kb on - strand, within HMPREF1058_RS06330 at 505.972 kb on - strand at 506.030 kb on + strand at 506.108 kb on + strand, within HMPREF1058_RS06325 at 506.191 kb on + strand, within HMPREF1058_RS06325 at 506.201 kb on + strand, within HMPREF1058_RS06325 at 506.231 kb on + strand, within HMPREF1058_RS06325 at 506.232 kb on - strand, within HMPREF1058_RS06325 at 506.295 kb on + strand, within HMPREF1058_RS06325 at 506.330 kb on + strand, within HMPREF1058_RS06325 at 506.470 kb on + strand, within HMPREF1058_RS06325 at 506.471 kb on - strand, within HMPREF1058_RS06325 at 506.598 kb on - strand at 506.641 kb on - strand at 506.641 kb on - strand at 506.643 kb on - strand at 506.644 kb on + strand at 506.644 kb on + strand at 506.651 kb on - strand at 506.655 kb on - strand at 506.744 kb on + strand, within HMPREF1058_RS06320 at 506.795 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.800 kb on - strand, within HMPREF1058_RS06320 at 506.805 kb on - strand, within HMPREF1058_RS06320 at 506.885 kb on - strand, within HMPREF1058_RS06320 at 506.914 kb on + strand, within HMPREF1058_RS06320 at 506.915 kb on - strand, within HMPREF1058_RS06320
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 504,236 - -0.3 504,236 - -1.5 504,236 - -2.6 504,250 - +0.0 504,252 + -0.9 504,255 + -0.8 504,291 + -1.8 504,291 + -1.4 504,292 - -0.9 504,301 + -1.7 504,302 - +0.6 504,302 - -1.7 504,305 + -0.7 504,306 - -1.3 504,306 - -0.7 504,327 + -1.2 504,454 + HMPREF1058_RS06335 0.22 -2.2 504,478 + HMPREF1058_RS06335 0.24 -3.1 504,480 + HMPREF1058_RS06335 0.25 -1.9 504,481 - HMPREF1058_RS06335 0.25 -1.8 504,692 + HMPREF1058_RS06335 0.46 +0.0 504,715 + HMPREF1058_RS06335 0.48 -0.8 504,766 - HMPREF1058_RS06335 0.54 +0.0 504,786 + HMPREF1058_RS06335 0.56 -1.6 504,786 + HMPREF1058_RS06335 0.56 -2.0 504,787 - HMPREF1058_RS06335 0.56 -1.5 504,787 - HMPREF1058_RS06335 0.56 -1.1 504,819 + HMPREF1058_RS06335 0.59 -2.2 504,862 + HMPREF1058_RS06335 0.63 -1.9 504,862 + HMPREF1058_RS06335 0.63 -1.6 504,862 + HMPREF1058_RS06335 0.63 -1.3 504,862 + HMPREF1058_RS06335 0.63 -2.1 504,862 + HMPREF1058_RS06335 0.63 -0.6 504,862 + HMPREF1058_RS06335 0.63 -2.0 504,863 - HMPREF1058_RS06335 0.63 -2.1 504,863 - HMPREF1058_RS06335 0.63 +1.0 504,863 - HMPREF1058_RS06335 0.63 -1.5 504,901 - HMPREF1058_RS06335 0.67 -1.7 504,919 - HMPREF1058_RS06335 0.69 -2.2 504,919 - HMPREF1058_RS06335 0.69 +1.4 504,988 + HMPREF1058_RS06335 0.76 -1.5 504,988 + HMPREF1058_RS06335 0.76 -2.7 505,031 + HMPREF1058_RS06335 0.80 -1.7 505,031 + HMPREF1058_RS06335 0.80 +0.8 505,036 + HMPREF1058_RS06335 0.81 -1.0 505,036 + HMPREF1058_RS06335 0.81 -1.5 505,036 + HMPREF1058_RS06335 0.81 -1.6 505,037 - HMPREF1058_RS06335 0.81 -1.7 505,037 - HMPREF1058_RS06335 0.81 -1.5 505,054 + HMPREF1058_RS06335 0.83 -2.6 505,067 - HMPREF1058_RS06335 0.84 +0.0 505,067 - HMPREF1058_RS06335 0.84 -3.2 505,133 - -0.6 505,147 - -1.3 505,184 + -1.4 505,189 + +0.7 505,195 + -0.2 505,443 + HMPREF1058_RS06330 0.28 -2.5 505,444 - HMPREF1058_RS06330 0.28 -1.7 505,444 - HMPREF1058_RS06330 0.28 -1.5 505,452 + HMPREF1058_RS06330 0.29 -1.2 505,557 + HMPREF1058_RS06330 0.42 -1.5 505,558 - HMPREF1058_RS06330 0.42 -1.8 505,568 - HMPREF1058_RS06330 0.44 -1.2 505,568 - HMPREF1058_RS06330 0.44 +0.3 505,627 - HMPREF1058_RS06330 0.51 -1.5 505,656 + HMPREF1058_RS06330 0.55 -1.0 505,685 + HMPREF1058_RS06330 0.58 -1.0 505,779 + HMPREF1058_RS06330 0.70 -0.0 505,779 + HMPREF1058_RS06330 0.70 +1.3 505,780 - HMPREF1058_RS06330 0.70 -1.5 505,972 - -1.2 506,030 + +0.4 506,108 + HMPREF1058_RS06325 0.13 -0.3 506,191 + HMPREF1058_RS06325 0.27 -1.6 506,201 + HMPREF1058_RS06325 0.29 -1.6 506,231 + HMPREF1058_RS06325 0.34 -1.0 506,232 - HMPREF1058_RS06325 0.34 -0.8 506,295 + HMPREF1058_RS06325 0.45 -0.8 506,330 + HMPREF1058_RS06325 0.51 -1.7 506,470 + HMPREF1058_RS06325 0.75 -1.8 506,471 - HMPREF1058_RS06325 0.75 +1.0 506,598 - +0.6 506,641 - +0.0 506,641 - -1.9 506,643 - -1.6 506,644 + -0.5 506,644 + +0.4 506,651 - -2.3 506,655 - -2.0 506,744 + HMPREF1058_RS06320 0.18 -2.0 506,795 + HMPREF1058_RS06320 0.27 -2.1 506,799 + HMPREF1058_RS06320 0.27 -1.5 506,799 + HMPREF1058_RS06320 0.27 -2.3 506,799 + HMPREF1058_RS06320 0.27 -0.2 506,800 - HMPREF1058_RS06320 0.28 -1.3 506,805 - HMPREF1058_RS06320 0.28 -1.7 506,885 - HMPREF1058_RS06320 0.42 -1.4 506,914 + HMPREF1058_RS06320 0.46 -1.4 506,915 - HMPREF1058_RS06320 0.47 -2.0
Or see this region's nucleotide sequence