Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06195 and HMPREF1058_RS06190 are separated by 107 nucleotides HMPREF1058_RS06190 and HMPREF1058_RS06185 are separated by 107 nucleotides HMPREF1058_RS06185 and HMPREF1058_RS06180 are separated by 1 nucleotides
HMPREF1058_RS06195: HMPREF1058_RS06195 - diaminopimelate decarboxylase, at 537,596 to 538,756
_RS06195
HMPREF1058_RS06190: HMPREF1058_RS06190 - aspartate kinase, at 538,864 to 540,183
_RS06190
HMPREF1058_RS06185: HMPREF1058_RS06185 - ATP-binding cassette domain-containing protein, at 540,291 to 541,049
_RS06185
HMPREF1058_RS06180: HMPREF1058_RS06180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 541,051 to 541,662
_RS06180
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 537.870 kb on - strand, within HMPREF1058_RS06195 at 537.873 kb on - strand, within HMPREF1058_RS06195 at 537.907 kb on - strand, within HMPREF1058_RS06195 at 537.945 kb on - strand, within HMPREF1058_RS06195 at 537.968 kb on + strand, within HMPREF1058_RS06195 at 538.006 kb on - strand, within HMPREF1058_RS06195 at 538.083 kb on - strand, within HMPREF1058_RS06195 at 538.090 kb on + strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.091 kb on - strand, within HMPREF1058_RS06195 at 538.116 kb on + strand, within HMPREF1058_RS06195 at 538.117 kb on - strand, within HMPREF1058_RS06195 at 538.157 kb on + strand, within HMPREF1058_RS06195 at 538.171 kb on + strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.203 kb on - strand, within HMPREF1058_RS06195 at 538.306 kb on + strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.383 kb on - strand, within HMPREF1058_RS06195 at 538.419 kb on - strand, within HMPREF1058_RS06195 at 538.475 kb on - strand, within HMPREF1058_RS06195 at 538.478 kb on + strand, within HMPREF1058_RS06195 at 538.479 kb on - strand at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.489 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.548 kb on - strand, within HMPREF1058_RS06195 at 538.699 kb on - strand at 538.702 kb on - strand at 538.761 kb on + strand at 538.879 kb on + strand at 538.941 kb on + strand at 538.946 kb on + strand at 538.971 kb on + strand at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.058 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.090 kb on + strand, within HMPREF1058_RS06190 at 539.212 kb on + strand, within HMPREF1058_RS06190 at 539.358 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.387 kb on + strand, within HMPREF1058_RS06190 at 539.409 kb on + strand, within HMPREF1058_RS06190 at 539.410 kb on - strand, within HMPREF1058_RS06190 at 539.526 kb on + strand, within HMPREF1058_RS06190 at 539.527 kb on - strand, within HMPREF1058_RS06190 at 539.615 kb on - strand, within HMPREF1058_RS06190 at 539.710 kb on - strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.711 kb on + strand, within HMPREF1058_RS06190 at 539.712 kb on - strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 539.937 kb on - strand, within HMPREF1058_RS06190 at 540.027 kb on + strand, within HMPREF1058_RS06190 at 540.029 kb on + strand, within HMPREF1058_RS06190 at 540.085 kb on + strand at 540.116 kb on - strand at 540.124 kb on + strand at 540.160 kb on - strand at 540.173 kb on - strand at 540.219 kb on - strand at 540.219 kb on - strand at 540.222 kb on + strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.315 kb on - strand at 540.370 kb on + strand, within HMPREF1058_RS06185 at 540.371 kb on - strand, within HMPREF1058_RS06185 at 540.818 kb on + strand, within HMPREF1058_RS06185 at 540.819 kb on - strand, within HMPREF1058_RS06185 at 540.876 kb on + strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.877 kb on - strand, within HMPREF1058_RS06185 at 540.975 kb on + strand at 540.993 kb on + strand at 541.010 kb on + strand at 541.011 kb on - strand at 541.012 kb on + strand at 541.014 kb on + strand at 541.014 kb on + strand at 541.015 kb on - strand at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.136 kb on - strand, within HMPREF1058_RS06180 at 541.149 kb on - strand, within HMPREF1058_RS06180 at 541.169 kb on + strand, within HMPREF1058_RS06180
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 537,870 - HMPREF1058_RS06195 0.24 -2.4 537,873 - HMPREF1058_RS06195 0.24 -1.9 537,907 - HMPREF1058_RS06195 0.27 -1.6 537,945 - HMPREF1058_RS06195 0.30 -1.0 537,968 + HMPREF1058_RS06195 0.32 -2.7 538,006 - HMPREF1058_RS06195 0.35 -1.4 538,083 - HMPREF1058_RS06195 0.42 -3.2 538,090 + HMPREF1058_RS06195 0.43 -0.9 538,091 - HMPREF1058_RS06195 0.43 -1.9 538,091 - HMPREF1058_RS06195 0.43 -2.0 538,091 - HMPREF1058_RS06195 0.43 -3.0 538,116 + HMPREF1058_RS06195 0.45 +0.0 538,117 - HMPREF1058_RS06195 0.45 -0.9 538,157 + HMPREF1058_RS06195 0.48 -1.5 538,171 + HMPREF1058_RS06195 0.50 -2.2 538,203 - HMPREF1058_RS06195 0.52 -0.9 538,203 - HMPREF1058_RS06195 0.52 -1.9 538,306 + HMPREF1058_RS06195 0.61 -0.9 538,383 - HMPREF1058_RS06195 0.68 -2.1 538,383 - HMPREF1058_RS06195 0.68 -2.5 538,419 - HMPREF1058_RS06195 0.71 -2.0 538,475 - HMPREF1058_RS06195 0.76 -2.6 538,478 + HMPREF1058_RS06195 0.76 -2.7 538,479 - -1.3 538,489 - HMPREF1058_RS06195 0.77 -1.7 538,489 - HMPREF1058_RS06195 0.77 -0.8 538,489 - HMPREF1058_RS06195 0.77 -2.6 538,548 - HMPREF1058_RS06195 0.82 -2.1 538,548 - HMPREF1058_RS06195 0.82 -0.9 538,699 - -1.7 538,702 - -4.6 538,761 + -2.0 538,879 + -5.5 538,941 + -1.7 538,946 + -1.7 538,971 + -2.9 539,058 + HMPREF1058_RS06190 0.15 -1.3 539,058 + HMPREF1058_RS06190 0.15 -0.6 539,090 + HMPREF1058_RS06190 0.17 -4.2 539,090 + HMPREF1058_RS06190 0.17 +1.0 539,212 + HMPREF1058_RS06190 0.26 -0.8 539,358 + HMPREF1058_RS06190 0.37 -1.4 539,387 + HMPREF1058_RS06190 0.40 -1.5 539,387 + HMPREF1058_RS06190 0.40 -0.3 539,409 + HMPREF1058_RS06190 0.41 -1.8 539,410 - HMPREF1058_RS06190 0.41 +1.0 539,526 + HMPREF1058_RS06190 0.50 -1.9 539,527 - HMPREF1058_RS06190 0.50 +1.0 539,615 - HMPREF1058_RS06190 0.57 -0.6 539,710 - HMPREF1058_RS06190 0.64 +0.8 539,711 + HMPREF1058_RS06190 0.64 +0.0 539,711 + HMPREF1058_RS06190 0.64 +0.5 539,712 - HMPREF1058_RS06190 0.64 +0.0 539,937 - HMPREF1058_RS06190 0.81 -1.2 539,937 - HMPREF1058_RS06190 0.81 -1.3 540,027 + HMPREF1058_RS06190 0.88 -0.3 540,029 + HMPREF1058_RS06190 0.88 -1.2 540,085 + -1.7 540,116 - -1.0 540,124 + +0.0 540,160 - +0.4 540,173 - +0.6 540,219 - -1.6 540,219 - +0.1 540,222 + -0.3 540,315 - +0.5 540,315 - -0.9 540,315 - -0.2 540,370 + HMPREF1058_RS06185 0.10 -0.9 540,371 - HMPREF1058_RS06185 0.11 +0.5 540,818 + HMPREF1058_RS06185 0.69 -0.9 540,819 - HMPREF1058_RS06185 0.70 +1.5 540,876 + HMPREF1058_RS06185 0.77 -0.8 540,877 - HMPREF1058_RS06185 0.77 +0.3 540,877 - HMPREF1058_RS06185 0.77 +0.7 540,877 - HMPREF1058_RS06185 0.77 -0.1 540,975 + -0.1 540,993 + -0.6 541,010 + -0.0 541,011 - -1.1 541,012 + -1.8 541,014 + -0.4 541,014 + -0.8 541,015 - +2.0 541,136 - HMPREF1058_RS06180 0.14 -1.5 541,136 - HMPREF1058_RS06180 0.14 -2.2 541,136 - HMPREF1058_RS06180 0.14 -2.9 541,136 - HMPREF1058_RS06180 0.14 +0.1 541,149 - HMPREF1058_RS06180 0.16 +0.4 541,169 + HMPREF1058_RS06180 0.19 -2.2
Or see this region's nucleotide sequence