Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05930 and HMPREF1058_RS05925 are separated by 201 nucleotides HMPREF1058_RS05925 and HMPREF1058_RS05920 are separated by 21 nucleotides HMPREF1058_RS05920 and HMPREF1058_RS05915 overlap by 10 nucleotides
HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120
_RS05930
HMPREF1058_RS05925: HMPREF1058_RS05925 - DUF5024 domain-containing protein, at 48,322 to 48,936
_RS05925
HMPREF1058_RS05920: HMPREF1058_RS05920 - hypothetical protein, at 48,958 to 49,524
_RS05920
HMPREF1058_RS05915: HMPREF1058_RS05915 - sigma-70 family RNA polymerase sigma factor, at 49,515 to 49,985
_RS05915
Position (kb)
48
49 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 47.447 kb on - strand, within HMPREF1058_RS05930 at 47.447 kb on - strand, within HMPREF1058_RS05930 at 47.457 kb on + strand, within HMPREF1058_RS05930 at 47.539 kb on + strand, within HMPREF1058_RS05930 at 47.578 kb on + strand, within HMPREF1058_RS05930 at 47.613 kb on + strand, within HMPREF1058_RS05930 at 47.615 kb on + strand, within HMPREF1058_RS05930 at 47.738 kb on + strand, within HMPREF1058_RS05930 at 47.774 kb on + strand, within HMPREF1058_RS05930 at 47.775 kb on - strand, within HMPREF1058_RS05930 at 47.782 kb on + strand, within HMPREF1058_RS05930 at 47.840 kb on + strand, within HMPREF1058_RS05930 at 47.841 kb on - strand, within HMPREF1058_RS05930 at 47.841 kb on - strand, within HMPREF1058_RS05930 at 47.899 kb on + strand, within HMPREF1058_RS05930 at 47.932 kb on - strand, within HMPREF1058_RS05930 at 47.953 kb on - strand, within HMPREF1058_RS05930 at 47.982 kb on - strand, within HMPREF1058_RS05930 at 47.993 kb on - strand at 47.993 kb on - strand at 48.023 kb on + strand at 48.024 kb on - strand at 48.039 kb on + strand at 48.131 kb on + strand at 48.145 kb on + strand at 48.150 kb on + strand at 48.263 kb on + strand at 48.273 kb on - strand at 48.288 kb on - strand at 48.291 kb on - strand at 48.419 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.551 kb on - strand, within HMPREF1058_RS05925 at 48.606 kb on + strand, within HMPREF1058_RS05925 at 48.721 kb on + strand, within HMPREF1058_RS05925 at 49.131 kb on + strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.363 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.415 kb on - strand, within HMPREF1058_RS05920 at 49.443 kb on + strand at 49.530 kb on - strand at 49.530 kb on - strand at 49.542 kb on - strand at 49.542 kb on - strand at 49.665 kb on - strand, within HMPREF1058_RS05915 at 49.692 kb on + strand, within HMPREF1058_RS05915 at 49.696 kb on - strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915 at 49.715 kb on + strand, within HMPREF1058_RS05915
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 47,447 - HMPREF1058_RS05930 0.47 -0.6 47,447 - HMPREF1058_RS05930 0.47 -0.1 47,457 + HMPREF1058_RS05930 0.48 -0.4 47,539 + HMPREF1058_RS05930 0.54 -0.4 47,578 + HMPREF1058_RS05930 0.58 +1.1 47,613 + HMPREF1058_RS05930 0.60 +0.7 47,615 + HMPREF1058_RS05930 0.60 +0.9 47,738 + HMPREF1058_RS05930 0.70 -0.5 47,774 + HMPREF1058_RS05930 0.73 +1.0 47,775 - HMPREF1058_RS05930 0.73 +1.1 47,782 + HMPREF1058_RS05930 0.73 -0.5 47,840 + HMPREF1058_RS05930 0.78 +0.6 47,841 - HMPREF1058_RS05930 0.78 +0.5 47,841 - HMPREF1058_RS05930 0.78 +1.5 47,899 + HMPREF1058_RS05930 0.83 +0.8 47,932 - HMPREF1058_RS05930 0.85 -0.5 47,953 - HMPREF1058_RS05930 0.87 +1.9 47,982 - HMPREF1058_RS05930 0.89 +1.4 47,993 - +0.2 47,993 - +0.7 48,023 + +1.5 48,024 - +0.3 48,039 + +1.0 48,131 + +0.3 48,145 + +1.2 48,150 + +0.4 48,263 + -0.1 48,273 - -0.4 48,288 - -0.1 48,291 - +0.4 48,419 - HMPREF1058_RS05925 0.16 +2.1 48,551 - HMPREF1058_RS05925 0.37 -1.3 48,551 - HMPREF1058_RS05925 0.37 +0.5 48,606 + HMPREF1058_RS05925 0.46 +2.1 48,721 + HMPREF1058_RS05925 0.65 -0.6 49,131 + HMPREF1058_RS05920 0.31 +3.7 49,363 - HMPREF1058_RS05920 0.71 -0.3 49,363 - HMPREF1058_RS05920 0.71 -0.6 49,415 - HMPREF1058_RS05920 0.81 -0.3 49,415 - HMPREF1058_RS05920 0.81 -1.2 49,443 + -0.9 49,530 - -1.8 49,530 - +0.1 49,542 - -0.4 49,542 - +0.4 49,665 - HMPREF1058_RS05915 0.32 +0.7 49,692 + HMPREF1058_RS05915 0.38 +0.0 49,696 - HMPREF1058_RS05915 0.38 -1.3 49,715 + HMPREF1058_RS05915 0.42 -1.2 49,715 + HMPREF1058_RS05915 0.42 +1.0
Or see this region's nucleotide sequence