Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05925

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
47,447	-		HMPREF1058_RS05930	0.47	-0.6
47,447	-		HMPREF1058_RS05930	0.47	-0.1
47,457	+		HMPREF1058_RS05930	0.48	-0.4
47,539	+		HMPREF1058_RS05930	0.54	-0.4
47,578	+		HMPREF1058_RS05930	0.58	+1.1
47,613	+		HMPREF1058_RS05930	0.60	+0.7
47,615	+		HMPREF1058_RS05930	0.60	+0.9
47,738	+		HMPREF1058_RS05930	0.70	-0.5
47,774	+		HMPREF1058_RS05930	0.73	+1.0
47,775	-		HMPREF1058_RS05930	0.73	+1.1
47,782	+		HMPREF1058_RS05930	0.73	-0.5
47,840	+		HMPREF1058_RS05930	0.78	+0.6
47,841	-		HMPREF1058_RS05930	0.78	+0.5
47,841	-		HMPREF1058_RS05930	0.78	+1.5
47,899	+		HMPREF1058_RS05930	0.83	+0.8
47,932	-		HMPREF1058_RS05930	0.85	-0.5
47,953	-		HMPREF1058_RS05930	0.87	+1.9
47,982	-		HMPREF1058_RS05930	0.89	+1.4
47,993	-				+0.2
47,993	-				+0.7
48,023	+				+1.5
48,024	-				+0.3
48,039	+				+1.0
48,131	+				+0.3
48,145	+				+1.2
48,150	+				+0.4
48,263	+				-0.1
48,273	-				-0.4
48,288	-				-0.1
48,291	-				+0.4
48,419	-		HMPREF1058_RS05925	0.16	+2.1
48,551	-		HMPREF1058_RS05925	0.37	-1.3
48,551	-		HMPREF1058_RS05925	0.37	+0.5
48,606	+		HMPREF1058_RS05925	0.46	+2.1
48,721	+		HMPREF1058_RS05925	0.65	-0.6
49,131	+		HMPREF1058_RS05920	0.31	+3.7
49,363	-		HMPREF1058_RS05920	0.71	-0.3
49,363	-		HMPREF1058_RS05920	0.71	-0.6
49,415	-		HMPREF1058_RS05920	0.81	-0.3
49,415	-		HMPREF1058_RS05920	0.81	-1.2
49,443	+				-0.9
49,530	-				-1.8
49,530	-				+0.1
49,542	-				-0.4
49,542	-				+0.4
49,665	-		HMPREF1058_RS05915	0.32	+0.7
49,692	+		HMPREF1058_RS05915	0.38	+0.0
49,696	-		HMPREF1058_RS05915	0.38	-1.3
49,715	+		HMPREF1058_RS05915	0.42	-1.2
49,715	+		HMPREF1058_RS05915	0.42	+1.0