Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05925

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05930 and HMPREF1058_RS05925 are separated by 201 nucleotidesHMPREF1058_RS05925 and HMPREF1058_RS05920 are separated by 21 nucleotidesHMPREF1058_RS05920 and HMPREF1058_RS05915 overlap by 10 nucleotides HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120 _RS05930 HMPREF1058_RS05925: HMPREF1058_RS05925 - DUF5024 domain-containing protein, at 48,322 to 48,936 _RS05925 HMPREF1058_RS05920: HMPREF1058_RS05920 - hypothetical protein, at 48,958 to 49,524 _RS05920 HMPREF1058_RS05915: HMPREF1058_RS05915 - sigma-70 family RNA polymerase sigma factor, at 49,515 to 49,985 _RS05915 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2 3at 47.447 kb on - strand, within HMPREF1058_RS05930at 47.447 kb on - strand, within HMPREF1058_RS05930at 47.457 kb on + strand, within HMPREF1058_RS05930at 47.539 kb on + strand, within HMPREF1058_RS05930at 47.578 kb on + strand, within HMPREF1058_RS05930at 47.613 kb on + strand, within HMPREF1058_RS05930at 47.615 kb on + strand, within HMPREF1058_RS05930at 47.738 kb on + strand, within HMPREF1058_RS05930at 47.774 kb on + strand, within HMPREF1058_RS05930at 47.775 kb on - strand, within HMPREF1058_RS05930at 47.782 kb on + strand, within HMPREF1058_RS05930at 47.840 kb on + strand, within HMPREF1058_RS05930at 47.841 kb on - strand, within HMPREF1058_RS05930at 47.841 kb on - strand, within HMPREF1058_RS05930at 47.899 kb on + strand, within HMPREF1058_RS05930at 47.932 kb on - strand, within HMPREF1058_RS05930at 47.953 kb on - strand, within HMPREF1058_RS05930at 47.982 kb on - strand, within HMPREF1058_RS05930at 47.993 kb on - strandat 47.993 kb on - strandat 48.023 kb on + strandat 48.024 kb on - strandat 48.039 kb on + strandat 48.131 kb on + strandat 48.145 kb on + strandat 48.150 kb on + strandat 48.263 kb on + strandat 48.273 kb on - strandat 48.288 kb on - strandat 48.291 kb on - strandat 48.419 kb on - strand, within HMPREF1058_RS05925at 48.551 kb on - strand, within HMPREF1058_RS05925at 48.551 kb on - strand, within HMPREF1058_RS05925at 48.606 kb on + strand, within HMPREF1058_RS05925at 48.721 kb on + strand, within HMPREF1058_RS05925at 49.131 kb on + strand, within HMPREF1058_RS05920at 49.363 kb on - strand, within HMPREF1058_RS05920at 49.363 kb on - strand, within HMPREF1058_RS05920at 49.415 kb on - strand, within HMPREF1058_RS05920at 49.415 kb on - strand, within HMPREF1058_RS05920at 49.443 kb on + strandat 49.530 kb on - strandat 49.530 kb on - strandat 49.542 kb on - strandat 49.542 kb on - strandat 49.665 kb on - strand, within HMPREF1058_RS05915at 49.692 kb on + strand, within HMPREF1058_RS05915at 49.696 kb on - strand, within HMPREF1058_RS05915at 49.715 kb on + strand, within HMPREF1058_RS05915at 49.715 kb on + strand, within HMPREF1058_RS05915

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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47,447 - HMPREF1058_RS05930 0.47 -0.6
47,447 - HMPREF1058_RS05930 0.47 -0.1
47,457 + HMPREF1058_RS05930 0.48 -0.4
47,539 + HMPREF1058_RS05930 0.54 -0.4
47,578 + HMPREF1058_RS05930 0.58 +1.1
47,613 + HMPREF1058_RS05930 0.60 +0.7
47,615 + HMPREF1058_RS05930 0.60 +0.9
47,738 + HMPREF1058_RS05930 0.70 -0.5
47,774 + HMPREF1058_RS05930 0.73 +1.0
47,775 - HMPREF1058_RS05930 0.73 +1.1
47,782 + HMPREF1058_RS05930 0.73 -0.5
47,840 + HMPREF1058_RS05930 0.78 +0.6
47,841 - HMPREF1058_RS05930 0.78 +0.5
47,841 - HMPREF1058_RS05930 0.78 +1.5
47,899 + HMPREF1058_RS05930 0.83 +0.8
47,932 - HMPREF1058_RS05930 0.85 -0.5
47,953 - HMPREF1058_RS05930 0.87 +1.9
47,982 - HMPREF1058_RS05930 0.89 +1.4
47,993 - +0.2
47,993 - +0.7
48,023 + +1.5
48,024 - +0.3
48,039 + +1.0
48,131 + +0.3
48,145 + +1.2
48,150 + +0.4
48,263 + -0.1
48,273 - -0.4
48,288 - -0.1
48,291 - +0.4
48,419 - HMPREF1058_RS05925 0.16 +2.1
48,551 - HMPREF1058_RS05925 0.37 -1.3
48,551 - HMPREF1058_RS05925 0.37 +0.5
48,606 + HMPREF1058_RS05925 0.46 +2.1
48,721 + HMPREF1058_RS05925 0.65 -0.6
49,131 + HMPREF1058_RS05920 0.31 +3.7
49,363 - HMPREF1058_RS05920 0.71 -0.3
49,363 - HMPREF1058_RS05920 0.71 -0.6
49,415 - HMPREF1058_RS05920 0.81 -0.3
49,415 - HMPREF1058_RS05920 0.81 -1.2
49,443 + -0.9
49,530 - -1.8
49,530 - +0.1
49,542 - -0.4
49,542 - +0.4
49,665 - HMPREF1058_RS05915 0.32 +0.7
49,692 + HMPREF1058_RS05915 0.38 +0.0
49,696 - HMPREF1058_RS05915 0.38 -1.3
49,715 + HMPREF1058_RS05915 0.42 -1.2
49,715 + HMPREF1058_RS05915 0.42 +1.0

Or see this region's nucleotide sequence