Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05785 and HMPREF1058_RS05780 are separated by 143 nucleotides HMPREF1058_RS05780 and HMPREF1058_RS05775 are separated by 13 nucleotides HMPREF1058_RS05775 and HMPREF1058_RS05770 are separated by 145 nucleotides
HMPREF1058_RS05785: HMPREF1058_RS05785 - adenine nucleotide alpha hydrolase family protein, at 80,437 to 81,192
_RS05785
HMPREF1058_RS05780: HMPREF1058_RS05780 - PD40 domain-containing protein, at 81,336 to 82,745
_RS05780
HMPREF1058_RS05775: HMPREF1058_RS05775 - NfeD family protein, at 82,759 to 83,229
_RS05775
HMPREF1058_RS05770: HMPREF1058_RS05770 - flotillin-like protein FloA, at 83,375 to 84,373
_RS05770
Position (kb) 81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 80.337 kb on - strand at 80.348 kb on - strand at 80.387 kb on - strand at 80.391 kb on - strand at 80.392 kb on + strand at 80.407 kb on + strand at 80.441 kb on - strand at 80.506 kb on - strand at 80.506 kb on - strand at 80.540 kb on + strand, within HMPREF1058_RS05785 at 80.542 kb on + strand, within HMPREF1058_RS05785 at 80.557 kb on - strand, within HMPREF1058_RS05785 at 80.671 kb on - strand, within HMPREF1058_RS05785 at 80.715 kb on + strand, within HMPREF1058_RS05785 at 80.739 kb on + strand, within HMPREF1058_RS05785 at 80.923 kb on + strand, within HMPREF1058_RS05785 at 80.948 kb on + strand, within HMPREF1058_RS05785 at 80.974 kb on - strand, within HMPREF1058_RS05785 at 80.986 kb on + strand, within HMPREF1058_RS05785 at 80.987 kb on - strand, within HMPREF1058_RS05785 at 81.086 kb on - strand, within HMPREF1058_RS05785 at 81.096 kb on + strand, within HMPREF1058_RS05785 at 81.193 kb on - strand at 81.223 kb on - strand at 81.270 kb on - strand at 81.310 kb on + strand at 81.350 kb on + strand at 81.371 kb on - strand at 81.498 kb on + strand, within HMPREF1058_RS05780 at 81.617 kb on - strand, within HMPREF1058_RS05780 at 81.622 kb on - strand, within HMPREF1058_RS05780 at 81.649 kb on + strand, within HMPREF1058_RS05780 at 81.649 kb on + strand, within HMPREF1058_RS05780 at 81.653 kb on + strand, within HMPREF1058_RS05780 at 81.653 kb on + strand, within HMPREF1058_RS05780 at 81.654 kb on - strand, within HMPREF1058_RS05780 at 81.670 kb on + strand, within HMPREF1058_RS05780 at 81.670 kb on + strand, within HMPREF1058_RS05780 at 81.671 kb on - strand, within HMPREF1058_RS05780 at 81.671 kb on - strand, within HMPREF1058_RS05780 at 81.752 kb on - strand, within HMPREF1058_RS05780 at 81.776 kb on - strand, within HMPREF1058_RS05780 at 81.822 kb on - strand, within HMPREF1058_RS05780 at 81.849 kb on + strand, within HMPREF1058_RS05780 at 81.880 kb on - strand, within HMPREF1058_RS05780 at 81.899 kb on + strand, within HMPREF1058_RS05780 at 81.945 kb on + strand, within HMPREF1058_RS05780 at 81.946 kb on - strand, within HMPREF1058_RS05780 at 81.946 kb on - strand, within HMPREF1058_RS05780 at 82.018 kb on + strand, within HMPREF1058_RS05780 at 82.050 kb on - strand, within HMPREF1058_RS05780 at 82.056 kb on + strand, within HMPREF1058_RS05780 at 82.057 kb on - strand, within HMPREF1058_RS05780 at 82.059 kb on + strand, within HMPREF1058_RS05780 at 82.059 kb on + strand, within HMPREF1058_RS05780 at 82.060 kb on - strand, within HMPREF1058_RS05780 at 82.113 kb on + strand, within HMPREF1058_RS05780 at 82.153 kb on + strand, within HMPREF1058_RS05780 at 82.154 kb on - strand, within HMPREF1058_RS05780 at 82.185 kb on + strand, within HMPREF1058_RS05780 at 82.186 kb on - strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.191 kb on + strand, within HMPREF1058_RS05780 at 82.262 kb on + strand, within HMPREF1058_RS05780 at 82.267 kb on - strand, within HMPREF1058_RS05780 at 82.314 kb on - strand, within HMPREF1058_RS05780 at 82.365 kb on - strand, within HMPREF1058_RS05780 at 82.422 kb on + strand, within HMPREF1058_RS05780 at 82.468 kb on + strand, within HMPREF1058_RS05780 at 82.603 kb on - strand, within HMPREF1058_RS05780 at 82.603 kb on - strand, within HMPREF1058_RS05780 at 82.667 kb on + strand at 82.746 kb on + strand at 82.747 kb on - strand at 82.754 kb on + strand at 82.755 kb on - strand at 82.770 kb on + strand at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.810 kb on - strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.874 kb on + strand, within HMPREF1058_RS05775 at 82.875 kb on - strand, within HMPREF1058_RS05775 at 82.875 kb on - strand, within HMPREF1058_RS05775 at 82.885 kb on + strand, within HMPREF1058_RS05775 at 82.975 kb on - strand, within HMPREF1058_RS05775 at 83.018 kb on + strand, within HMPREF1058_RS05775 at 83.019 kb on - strand, within HMPREF1058_RS05775 at 83.024 kb on - strand, within HMPREF1058_RS05775 at 83.025 kb on + strand, within HMPREF1058_RS05775 at 83.166 kb on + strand, within HMPREF1058_RS05775 at 83.167 kb on - strand, within HMPREF1058_RS05775 at 83.167 kb on - strand, within HMPREF1058_RS05775 at 83.244 kb on - strand at 83.292 kb on + strand at 83.293 kb on - strand at 83.298 kb on - strand at 83.359 kb on + strand at 83.372 kb on - strand at 83.391 kb on - strand at 83.391 kb on - strand at 83.409 kb on + strand at 83.433 kb on + strand at 83.434 kb on - strand at 83.434 kb on - strand at 83.437 kb on - strand at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.622 kb on - strand, within HMPREF1058_RS05770 at 83.624 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.662 kb on - strand, within HMPREF1058_RS05770 at 83.737 kb on - strand, within HMPREF1058_RS05770
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 80,337 - -0.1 80,348 - +0.9 80,387 - +0.8 80,391 - -0.1 80,392 + -0.9 80,407 + -0.1 80,441 - +0.1 80,506 - -0.6 80,506 - +1.3 80,540 + HMPREF1058_RS05785 0.14 -0.4 80,542 + HMPREF1058_RS05785 0.14 +1.0 80,557 - HMPREF1058_RS05785 0.16 +0.3 80,671 - HMPREF1058_RS05785 0.31 -0.1 80,715 + HMPREF1058_RS05785 0.37 +1.1 80,739 + HMPREF1058_RS05785 0.40 +0.1 80,923 + HMPREF1058_RS05785 0.64 -1.7 80,948 + HMPREF1058_RS05785 0.68 -1.2 80,974 - HMPREF1058_RS05785 0.71 -0.3 80,986 + HMPREF1058_RS05785 0.73 +0.1 80,987 - HMPREF1058_RS05785 0.73 +0.6 81,086 - HMPREF1058_RS05785 0.86 +0.1 81,096 + HMPREF1058_RS05785 0.87 +0.7 81,193 - -0.3 81,223 - +0.5 81,270 - -1.1 81,310 + -1.2 81,350 + +0.3 81,371 - -2.5 81,498 + HMPREF1058_RS05780 0.11 +1.1 81,617 - HMPREF1058_RS05780 0.20 -1.3 81,622 - HMPREF1058_RS05780 0.20 +2.8 81,649 + HMPREF1058_RS05780 0.22 -1.2 81,649 + HMPREF1058_RS05780 0.22 -2.3 81,653 + HMPREF1058_RS05780 0.22 -0.5 81,653 + HMPREF1058_RS05780 0.22 -2.3 81,654 - HMPREF1058_RS05780 0.23 +0.5 81,670 + HMPREF1058_RS05780 0.24 -0.4 81,670 + HMPREF1058_RS05780 0.24 -1.3 81,671 - HMPREF1058_RS05780 0.24 -0.3 81,671 - HMPREF1058_RS05780 0.24 +0.1 81,752 - HMPREF1058_RS05780 0.30 -1.1 81,776 - HMPREF1058_RS05780 0.31 -0.9 81,822 - HMPREF1058_RS05780 0.34 +0.7 81,849 + HMPREF1058_RS05780 0.36 -1.7 81,880 - HMPREF1058_RS05780 0.39 -1.1 81,899 + HMPREF1058_RS05780 0.40 -2.2 81,945 + HMPREF1058_RS05780 0.43 -3.5 81,946 - HMPREF1058_RS05780 0.43 +3.1 81,946 - HMPREF1058_RS05780 0.43 -3.1 82,018 + HMPREF1058_RS05780 0.48 -1.6 82,050 - HMPREF1058_RS05780 0.51 -0.9 82,056 + HMPREF1058_RS05780 0.51 -1.6 82,057 - HMPREF1058_RS05780 0.51 -1.0 82,059 + HMPREF1058_RS05780 0.51 -1.4 82,059 + HMPREF1058_RS05780 0.51 -1.7 82,060 - HMPREF1058_RS05780 0.51 -0.6 82,113 + HMPREF1058_RS05780 0.55 -1.3 82,153 + HMPREF1058_RS05780 0.58 -3.5 82,154 - HMPREF1058_RS05780 0.58 -0.9 82,185 + HMPREF1058_RS05780 0.60 -0.3 82,186 - HMPREF1058_RS05780 0.60 -0.4 82,191 + HMPREF1058_RS05780 0.61 -1.4 82,191 + HMPREF1058_RS05780 0.61 +0.6 82,191 + HMPREF1058_RS05780 0.61 -0.9 82,191 + HMPREF1058_RS05780 0.61 -1.5 82,262 + HMPREF1058_RS05780 0.66 -2.4 82,267 - HMPREF1058_RS05780 0.66 -1.8 82,314 - HMPREF1058_RS05780 0.69 +3.7 82,365 - HMPREF1058_RS05780 0.73 -1.5 82,422 + HMPREF1058_RS05780 0.77 -0.6 82,468 + HMPREF1058_RS05780 0.80 -3.8 82,603 - HMPREF1058_RS05780 0.90 -1.6 82,603 - HMPREF1058_RS05780 0.90 -2.8 82,667 + -1.5 82,746 + +1.1 82,747 - +2.8 82,754 + -0.5 82,755 - -1.5 82,770 + -0.1 82,810 - HMPREF1058_RS05775 0.11 -1.1 82,810 - HMPREF1058_RS05775 0.11 -0.4 82,810 - HMPREF1058_RS05775 0.11 +0.9 82,874 + HMPREF1058_RS05775 0.24 +1.1 82,874 + HMPREF1058_RS05775 0.24 -0.2 82,874 + HMPREF1058_RS05775 0.24 +0.3 82,875 - HMPREF1058_RS05775 0.25 -0.5 82,875 - HMPREF1058_RS05775 0.25 +0.7 82,885 + HMPREF1058_RS05775 0.27 -0.6 82,975 - HMPREF1058_RS05775 0.46 +0.3 83,018 + HMPREF1058_RS05775 0.55 -0.1 83,019 - HMPREF1058_RS05775 0.55 +0.6 83,024 - HMPREF1058_RS05775 0.56 -0.8 83,025 + HMPREF1058_RS05775 0.56 -0.3 83,166 + HMPREF1058_RS05775 0.86 +2.2 83,167 - HMPREF1058_RS05775 0.87 -1.0 83,167 - HMPREF1058_RS05775 0.87 +0.3 83,244 - -1.4 83,292 + -1.0 83,293 - +0.9 83,298 - -1.4 83,359 + +0.5 83,372 - +0.3 83,391 - +1.0 83,391 - +0.4 83,409 + +0.1 83,433 + +0.7 83,434 - -0.0 83,434 - +0.6 83,437 - -0.4 83,622 - HMPREF1058_RS05770 0.25 +1.5 83,622 - HMPREF1058_RS05770 0.25 +0.7 83,622 - HMPREF1058_RS05770 0.25 -1.0 83,624 - HMPREF1058_RS05770 0.25 +2.2 83,662 - HMPREF1058_RS05770 0.29 +0.5 83,662 - HMPREF1058_RS05770 0.29 -1.2 83,737 - HMPREF1058_RS05770 0.36 +0.3
Or see this region's nucleotide sequence