Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05615

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
117,829	+		HMPREF1058_RS05625	0.29	+0.3
117,829	+		HMPREF1058_RS05625	0.29	-0.0
117,830	-		HMPREF1058_RS05625	0.29	-1.1
117,856	+		HMPREF1058_RS05625	0.32	-0.6
118,007	+		HMPREF1058_RS05625	0.48	-0.7
118,007	+		HMPREF1058_RS05625	0.48	+0.5
118,023	+				-0.9
118,118	-		HMPREF1058_RS05625	0.59	-2.1
118,122	+		HMPREF1058_RS05625	0.60	-1.1
118,122	+		HMPREF1058_RS05625	0.60	-0.5
118,156	+		HMPREF1058_RS05625	0.63	-0.1
118,156	+		HMPREF1058_RS05625	0.63	+0.6
118,157	-		HMPREF1058_RS05625	0.63	-0.6
118,245	+		HMPREF1058_RS05625	0.73	-0.5
118,246	-		HMPREF1058_RS05625	0.73	+0.3
118,246	-		HMPREF1058_RS05625	0.73	-0.6
118,269	+		HMPREF1058_RS05625	0.75	-1.5
118,390	-		HMPREF1058_RS05625	0.88	-1.0
118,390	-		HMPREF1058_RS05625	0.88	-0.7
118,405	+		HMPREF1058_RS05625	0.90	-0.3
118,409	-				+0.7
118,450	-				-0.3
118,484	+				-0.3
118,485	-				+0.8
118,486	+				+0.5
118,487	-				+0.7
118,623	-		HMPREF1058_RS05620	0.38	-1.1
118,678	+		HMPREF1058_RS05620	0.55	-0.3
118,678	+		HMPREF1058_RS05620	0.55	-0.0
118,678	+		HMPREF1058_RS05620	0.55	-1.7
118,817	-				-0.6
118,992	-		HMPREF1058_RS05615	0.79	-0.7
119,019	+				+1.4
119,029	-				-1.7
119,079	+				-0.1
119,150	-				-2.1
119,150	-				+0.9
119,150	-				-0.4
119,150	-				-0.3
119,164	-				+0.3
119,166	-				-2.0
119,204	+				+0.7
119,205	-				-1.9
119,205	-				+0.4
119,207	-				+0.5
119,213	+				+0.7
119,244	+				+0.3
119,244	+				-0.9
119,245	-				+0.1
119,246	+				-0.2
119,256	-				-0.1
119,265	+				-0.0
119,385	-				+0.2
119,390	+				+0.5
119,401	-				-1.3
119,401	-				-1.9
119,435	+				+0.1
119,451	+				-0.1
119,452	-				-0.2
119,527	+				-0.0
119,636	+		HMPREF1058_RS05610	0.19	+1.2
119,641	+		HMPREF1058_RS05610	0.20	+0.5
119,667	+		HMPREF1058_RS05610	0.23	+0.3
119,694	-		HMPREF1058_RS05610	0.25	+0.1
119,707	+		HMPREF1058_RS05610	0.26	-0.7
119,714	+		HMPREF1058_RS05610	0.27	+0.7
119,765	+		HMPREF1058_RS05610	0.32	-0.7
119,856	+		HMPREF1058_RS05610	0.41	+1.1
119,856	+		HMPREF1058_RS05610	0.41	+0.4
119,856	+		HMPREF1058_RS05610	0.41	+1.1
119,857	-		HMPREF1058_RS05610	0.41	-0.2
119,867	+		HMPREF1058_RS05610	0.42	+0.8
119,889	-		HMPREF1058_RS05610	0.45	-0.9
120,004	-		HMPREF1058_RS05610	0.56	-2.1
120,012	+		HMPREF1058_RS05610	0.57	-0.7
120,013	-		HMPREF1058_RS05610	0.57	+0.3
120,013	-		HMPREF1058_RS05610	0.57	+1.0
120,016	+		HMPREF1058_RS05610	0.57	-2.0
120,017	-		HMPREF1058_RS05610	0.57	+1.1