Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05625 and HMPREF1058_RS05620 overlap by 8 nucleotides HMPREF1058_RS05620 and HMPREF1058_RS05615 overlap by 4 nucleotides HMPREF1058_RS05615 and HMPREF1058_RS05610 are separated by 405 nucleotides
HMPREF1058_RS05625: HMPREF1058_RS05625 - HipA domain-containing protein, at 117,559 to 118,500
_RS05625
HMPREF1058_RS05620: HMPREF1058_RS05620 - HipA N-terminal domain-containing protein, at 118,493 to 118,831
_RS05620
HMPREF1058_RS05615: HMPREF1058_RS05615 - helix-turn-helix transcriptional regulator, at 118,828 to 119,034
_RS05615
HMPREF1058_RS05610: HMPREF1058_RS05610 - DUF2971 domain-containing protein, at 119,440 to 120,447
_RS05610
Position (kb)
118
119
120 Strain fitness (log2 ratio)
-2
-1
0
1 at 117.829 kb on + strand, within HMPREF1058_RS05625 at 117.829 kb on + strand, within HMPREF1058_RS05625 at 117.830 kb on - strand, within HMPREF1058_RS05625 at 117.856 kb on + strand, within HMPREF1058_RS05625 at 118.007 kb on + strand, within HMPREF1058_RS05625 at 118.007 kb on + strand, within HMPREF1058_RS05625 at 118.023 kb on + strand at 118.118 kb on - strand, within HMPREF1058_RS05625 at 118.122 kb on + strand, within HMPREF1058_RS05625 at 118.122 kb on + strand, within HMPREF1058_RS05625 at 118.156 kb on + strand, within HMPREF1058_RS05625 at 118.156 kb on + strand, within HMPREF1058_RS05625 at 118.157 kb on - strand, within HMPREF1058_RS05625 at 118.245 kb on + strand, within HMPREF1058_RS05625 at 118.246 kb on - strand, within HMPREF1058_RS05625 at 118.246 kb on - strand, within HMPREF1058_RS05625 at 118.269 kb on + strand, within HMPREF1058_RS05625 at 118.390 kb on - strand, within HMPREF1058_RS05625 at 118.390 kb on - strand, within HMPREF1058_RS05625 at 118.405 kb on + strand, within HMPREF1058_RS05625 at 118.409 kb on - strand at 118.450 kb on - strand at 118.484 kb on + strand at 118.485 kb on - strand at 118.486 kb on + strand at 118.487 kb on - strand at 118.623 kb on - strand, within HMPREF1058_RS05620 at 118.678 kb on + strand, within HMPREF1058_RS05620 at 118.678 kb on + strand, within HMPREF1058_RS05620 at 118.678 kb on + strand, within HMPREF1058_RS05620 at 118.817 kb on - strand at 118.992 kb on - strand, within HMPREF1058_RS05615 at 119.019 kb on + strand at 119.029 kb on - strand at 119.079 kb on + strand at 119.150 kb on - strand at 119.150 kb on - strand at 119.150 kb on - strand at 119.150 kb on - strand at 119.164 kb on - strand at 119.166 kb on - strand at 119.204 kb on + strand at 119.205 kb on - strand at 119.205 kb on - strand at 119.207 kb on - strand at 119.213 kb on + strand at 119.244 kb on + strand at 119.244 kb on + strand at 119.245 kb on - strand at 119.246 kb on + strand at 119.256 kb on - strand at 119.265 kb on + strand at 119.385 kb on - strand at 119.390 kb on + strand at 119.401 kb on - strand at 119.401 kb on - strand at 119.435 kb on + strand at 119.451 kb on + strand at 119.452 kb on - strand at 119.527 kb on + strand at 119.636 kb on + strand, within HMPREF1058_RS05610 at 119.641 kb on + strand, within HMPREF1058_RS05610 at 119.667 kb on + strand, within HMPREF1058_RS05610 at 119.694 kb on - strand, within HMPREF1058_RS05610 at 119.707 kb on + strand, within HMPREF1058_RS05610 at 119.714 kb on + strand, within HMPREF1058_RS05610 at 119.765 kb on + strand, within HMPREF1058_RS05610 at 119.856 kb on + strand, within HMPREF1058_RS05610 at 119.856 kb on + strand, within HMPREF1058_RS05610 at 119.856 kb on + strand, within HMPREF1058_RS05610 at 119.857 kb on - strand, within HMPREF1058_RS05610 at 119.867 kb on + strand, within HMPREF1058_RS05610 at 119.889 kb on - strand, within HMPREF1058_RS05610 at 120.004 kb on - strand, within HMPREF1058_RS05610 at 120.012 kb on + strand, within HMPREF1058_RS05610 at 120.013 kb on - strand, within HMPREF1058_RS05610 at 120.013 kb on - strand, within HMPREF1058_RS05610 at 120.016 kb on + strand, within HMPREF1058_RS05610 at 120.017 kb on - strand, within HMPREF1058_RS05610
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 117,829 + HMPREF1058_RS05625 0.29 +0.3 117,829 + HMPREF1058_RS05625 0.29 -0.0 117,830 - HMPREF1058_RS05625 0.29 -1.1 117,856 + HMPREF1058_RS05625 0.32 -0.6 118,007 + HMPREF1058_RS05625 0.48 -0.7 118,007 + HMPREF1058_RS05625 0.48 +0.5 118,023 + -0.9 118,118 - HMPREF1058_RS05625 0.59 -2.1 118,122 + HMPREF1058_RS05625 0.60 -1.1 118,122 + HMPREF1058_RS05625 0.60 -0.5 118,156 + HMPREF1058_RS05625 0.63 -0.1 118,156 + HMPREF1058_RS05625 0.63 +0.6 118,157 - HMPREF1058_RS05625 0.63 -0.6 118,245 + HMPREF1058_RS05625 0.73 -0.5 118,246 - HMPREF1058_RS05625 0.73 +0.3 118,246 - HMPREF1058_RS05625 0.73 -0.6 118,269 + HMPREF1058_RS05625 0.75 -1.5 118,390 - HMPREF1058_RS05625 0.88 -1.0 118,390 - HMPREF1058_RS05625 0.88 -0.7 118,405 + HMPREF1058_RS05625 0.90 -0.3 118,409 - +0.7 118,450 - -0.3 118,484 + -0.3 118,485 - +0.8 118,486 + +0.5 118,487 - +0.7 118,623 - HMPREF1058_RS05620 0.38 -1.1 118,678 + HMPREF1058_RS05620 0.55 -0.3 118,678 + HMPREF1058_RS05620 0.55 -0.0 118,678 + HMPREF1058_RS05620 0.55 -1.7 118,817 - -0.6 118,992 - HMPREF1058_RS05615 0.79 -0.7 119,019 + +1.4 119,029 - -1.7 119,079 + -0.1 119,150 - -2.1 119,150 - +0.9 119,150 - -0.4 119,150 - -0.3 119,164 - +0.3 119,166 - -2.0 119,204 + +0.7 119,205 - -1.9 119,205 - +0.4 119,207 - +0.5 119,213 + +0.7 119,244 + +0.3 119,244 + -0.9 119,245 - +0.1 119,246 + -0.2 119,256 - -0.1 119,265 + -0.0 119,385 - +0.2 119,390 + +0.5 119,401 - -1.3 119,401 - -1.9 119,435 + +0.1 119,451 + -0.1 119,452 - -0.2 119,527 + -0.0 119,636 + HMPREF1058_RS05610 0.19 +1.2 119,641 + HMPREF1058_RS05610 0.20 +0.5 119,667 + HMPREF1058_RS05610 0.23 +0.3 119,694 - HMPREF1058_RS05610 0.25 +0.1 119,707 + HMPREF1058_RS05610 0.26 -0.7 119,714 + HMPREF1058_RS05610 0.27 +0.7 119,765 + HMPREF1058_RS05610 0.32 -0.7 119,856 + HMPREF1058_RS05610 0.41 +1.1 119,856 + HMPREF1058_RS05610 0.41 +0.4 119,856 + HMPREF1058_RS05610 0.41 +1.1 119,857 - HMPREF1058_RS05610 0.41 -0.2 119,867 + HMPREF1058_RS05610 0.42 +0.8 119,889 - HMPREF1058_RS05610 0.45 -0.9 120,004 - HMPREF1058_RS05610 0.56 -2.1 120,012 + HMPREF1058_RS05610 0.57 -0.7 120,013 - HMPREF1058_RS05610 0.57 +0.3 120,013 - HMPREF1058_RS05610 0.57 +1.0 120,016 + HMPREF1058_RS05610 0.57 -2.0 120,017 - HMPREF1058_RS05610 0.57 +1.1
Or see this region's nucleotide sequence