Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20285 and HMPREF1058_RS05570 are separated by 204 nucleotides HMPREF1058_RS05570 and HMPREF1058_RS05565 are separated by 11 nucleotides
HMPREF1058_RS20285: HMPREF1058_RS20285 - hypothetical protein, at 132,087 to 133,217
_RS20285
HMPREF1058_RS05570: HMPREF1058_RS05570 - helix-turn-helix domain-containing protein, at 133,422 to 133,790
_RS05570
HMPREF1058_RS05565: HMPREF1058_RS05565 - DUF3987 domain-containing protein, at 133,802 to 135,169
_RS05565
Position (kb) 133
134 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 132.445 kb on + strand, within HMPREF1058_RS20285 at 132.456 kb on - strand, within HMPREF1058_RS20285 at 132.494 kb on + strand, within HMPREF1058_RS20285 at 132.494 kb on + strand, within HMPREF1058_RS20285 at 132.494 kb on + strand, within HMPREF1058_RS20285 at 132.494 kb on + strand, within HMPREF1058_RS20285 at 132.543 kb on - strand, within HMPREF1058_RS20285 at 132.623 kb on + strand, within HMPREF1058_RS20285 at 132.623 kb on + strand, within HMPREF1058_RS20285 at 132.624 kb on - strand, within HMPREF1058_RS20285 at 132.771 kb on + strand, within HMPREF1058_RS20285 at 132.796 kb on - strand, within HMPREF1058_RS20285 at 132.813 kb on + strand, within HMPREF1058_RS20285 at 132.814 kb on - strand, within HMPREF1058_RS20285 at 132.814 kb on - strand, within HMPREF1058_RS20285 at 132.825 kb on + strand, within HMPREF1058_RS20285 at 132.825 kb on + strand, within HMPREF1058_RS20285 at 132.826 kb on - strand, within HMPREF1058_RS20285 at 132.862 kb on + strand, within HMPREF1058_RS20285 at 132.863 kb on - strand, within HMPREF1058_RS20285 at 132.864 kb on + strand, within HMPREF1058_RS20285 at 132.864 kb on + strand, within HMPREF1058_RS20285 at 132.865 kb on - strand, within HMPREF1058_RS20285 at 132.906 kb on + strand, within HMPREF1058_RS20285 at 132.914 kb on + strand, within HMPREF1058_RS20285 at 132.915 kb on - strand, within HMPREF1058_RS20285 at 132.932 kb on + strand, within HMPREF1058_RS20285 at 132.984 kb on - strand, within HMPREF1058_RS20285 at 133.016 kb on - strand, within HMPREF1058_RS20285 at 133.067 kb on + strand, within HMPREF1058_RS20285 at 133.068 kb on - strand, within HMPREF1058_RS20285 at 133.071 kb on + strand, within HMPREF1058_RS20285 at 133.072 kb on - strand, within HMPREF1058_RS20285 at 133.081 kb on - strand, within HMPREF1058_RS20285 at 133.082 kb on + strand, within HMPREF1058_RS20285 at 133.082 kb on + strand, within HMPREF1058_RS20285 at 133.082 kb on + strand, within HMPREF1058_RS20285 at 133.083 kb on - strand, within HMPREF1058_RS20285 at 133.083 kb on - strand, within HMPREF1058_RS20285 at 133.087 kb on - strand, within HMPREF1058_RS20285 at 133.118 kb on + strand at 133.129 kb on + strand at 133.167 kb on + strand at 133.167 kb on + strand at 133.168 kb on - strand at 133.198 kb on + strand at 133.221 kb on + strand at 133.242 kb on + strand at 133.259 kb on - strand at 133.421 kb on + strand at 133.422 kb on - strand at 133.449 kb on - strand at 133.602 kb on + strand, within HMPREF1058_RS05570 at 133.708 kb on + strand, within HMPREF1058_RS05570 at 133.709 kb on - strand, within HMPREF1058_RS05570 at 133.709 kb on - strand, within HMPREF1058_RS05570 at 133.744 kb on + strand, within HMPREF1058_RS05570 at 133.924 kb on + strand at 134.055 kb on - strand, within HMPREF1058_RS05565 at 134.055 kb on - strand, within HMPREF1058_RS05565 at 134.192 kb on - strand, within HMPREF1058_RS05565 at 134.192 kb on - strand, within HMPREF1058_RS05565 at 134.477 kb on + strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565 at 134.478 kb on - strand, within HMPREF1058_RS05565
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 132,445 + HMPREF1058_RS20285 0.32 +1.5 132,456 - HMPREF1058_RS20285 0.33 -1.1 132,494 + HMPREF1058_RS20285 0.36 +0.0 132,494 + HMPREF1058_RS20285 0.36 +1.7 132,494 + HMPREF1058_RS20285 0.36 +0.4 132,494 + HMPREF1058_RS20285 0.36 -0.3 132,543 - HMPREF1058_RS20285 0.40 -0.2 132,623 + HMPREF1058_RS20285 0.47 +0.1 132,623 + HMPREF1058_RS20285 0.47 +0.2 132,624 - HMPREF1058_RS20285 0.47 -0.1 132,771 + HMPREF1058_RS20285 0.60 +0.3 132,796 - HMPREF1058_RS20285 0.63 -1.1 132,813 + HMPREF1058_RS20285 0.64 -0.3 132,814 - HMPREF1058_RS20285 0.64 +1.1 132,814 - HMPREF1058_RS20285 0.64 +3.1 132,825 + HMPREF1058_RS20285 0.65 +0.3 132,825 + HMPREF1058_RS20285 0.65 +1.1 132,826 - HMPREF1058_RS20285 0.65 +0.5 132,862 + HMPREF1058_RS20285 0.69 -0.4 132,863 - HMPREF1058_RS20285 0.69 -0.6 132,864 + HMPREF1058_RS20285 0.69 -1.1 132,864 + HMPREF1058_RS20285 0.69 +0.6 132,865 - HMPREF1058_RS20285 0.69 +1.0 132,906 + HMPREF1058_RS20285 0.72 -0.8 132,914 + HMPREF1058_RS20285 0.73 -1.5 132,915 - HMPREF1058_RS20285 0.73 +0.5 132,932 + HMPREF1058_RS20285 0.75 -0.5 132,984 - HMPREF1058_RS20285 0.79 +1.2 133,016 - HMPREF1058_RS20285 0.82 -0.1 133,067 + HMPREF1058_RS20285 0.87 -0.3 133,068 - HMPREF1058_RS20285 0.87 +1.3 133,071 + HMPREF1058_RS20285 0.87 -1.3 133,072 - HMPREF1058_RS20285 0.87 -1.2 133,081 - HMPREF1058_RS20285 0.88 -0.7 133,082 + HMPREF1058_RS20285 0.88 +0.7 133,082 + HMPREF1058_RS20285 0.88 -0.6 133,082 + HMPREF1058_RS20285 0.88 +0.3 133,083 - HMPREF1058_RS20285 0.88 -1.4 133,083 - HMPREF1058_RS20285 0.88 +0.3 133,087 - HMPREF1058_RS20285 0.88 -1.0 133,118 + +1.3 133,129 + +0.8 133,167 + +0.7 133,167 + -0.3 133,168 - -1.6 133,198 + -0.6 133,221 + -0.3 133,242 + +0.1 133,259 - +0.3 133,421 + -0.2 133,422 - -0.6 133,449 - +0.4 133,602 + HMPREF1058_RS05570 0.49 -1.6 133,708 + HMPREF1058_RS05570 0.78 -0.7 133,709 - HMPREF1058_RS05570 0.78 -0.6 133,709 - HMPREF1058_RS05570 0.78 +0.3 133,744 + HMPREF1058_RS05570 0.87 -2.7 133,924 + +0.7 134,055 - HMPREF1058_RS05565 0.18 +0.7 134,055 - HMPREF1058_RS05565 0.18 -0.0 134,192 - HMPREF1058_RS05565 0.29 +0.5 134,192 - HMPREF1058_RS05565 0.29 -1.4 134,477 + HMPREF1058_RS05565 0.49 +1.4 134,478 - HMPREF1058_RS05565 0.49 +0.6 134,478 - HMPREF1058_RS05565 0.49 -0.1 134,478 - HMPREF1058_RS05565 0.49 -0.2
Or see this region's nucleotide sequence