Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05465

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05470 and HMPREF1058_RS05465 are separated by 212 nucleotidesHMPREF1058_RS05465 and HMPREF1058_RS05460 are separated by 126 nucleotides HMPREF1058_RS05470: HMPREF1058_RS05470 - carboxymuconolactone decarboxylase family protein, at 158,378 to 159,985 _RS05470 HMPREF1058_RS05465: HMPREF1058_RS05465 - DNA-binding protein, at 160,198 to 160,755 _RS05465 HMPREF1058_RS05460: HMPREF1058_RS05460 - aldo/keto reductase, at 160,882 to 162,054 _RS05460 Position (kb) 160 161Strain fitness (log2 ratio) -2 -1 0 1 2at 159.360 kb on + strand, within HMPREF1058_RS05470at 159.494 kb on + strand, within HMPREF1058_RS05470at 159.494 kb on + strand, within HMPREF1058_RS05470at 159.494 kb on + strand, within HMPREF1058_RS05470at 159.494 kb on + strand, within HMPREF1058_RS05470at 159.495 kb on - strand, within HMPREF1058_RS05470at 159.495 kb on - strand, within HMPREF1058_RS05470at 159.495 kb on - strand, within HMPREF1058_RS05470at 159.495 kb on - strand, within HMPREF1058_RS05470at 159.495 kb on - strand, within HMPREF1058_RS05470at 159.939 kb on + strandat 159.940 kb on - strandat 160.008 kb on - strandat 160.048 kb on - strandat 160.121 kb on + strandat 160.122 kb on - strandat 160.122 kb on - strandat 160.229 kb on + strandat 160.236 kb on - strandat 160.252 kb on - strandat 160.331 kb on - strand, within HMPREF1058_RS05465at 160.557 kb on + strand, within HMPREF1058_RS05465at 160.558 kb on - strand, within HMPREF1058_RS05465at 160.558 kb on - strand, within HMPREF1058_RS05465at 160.566 kb on + strand, within HMPREF1058_RS05465at 160.580 kb on + strand, within HMPREF1058_RS05465at 160.596 kb on + strand, within HMPREF1058_RS05465at 160.713 kb on + strandat 160.768 kb on - strandat 160.768 kb on - strandat 160.769 kb on + strandat 160.770 kb on - strandat 160.790 kb on - strandat 160.790 kb on - strandat 160.810 kb on + strandat 160.811 kb on - strandat 160.812 kb on + strandat 160.813 kb on - strandat 160.813 kb on - strandat 160.813 kb on - strandat 160.813 kb on - strandat 160.890 kb on + strandat 160.891 kb on - strandat 160.901 kb on + strandat 161.088 kb on + strand, within HMPREF1058_RS05460at 161.088 kb on + strand, within HMPREF1058_RS05460at 161.274 kb on + strand, within HMPREF1058_RS05460at 161.335 kb on - strand, within HMPREF1058_RS05460at 161.425 kb on + strand, within HMPREF1058_RS05460at 161.518 kb on - strand, within HMPREF1058_RS05460at 161.561 kb on + strand, within HMPREF1058_RS05460at 161.561 kb on + strand, within HMPREF1058_RS05460at 161.668 kb on + strand, within HMPREF1058_RS05460at 161.701 kb on - strand, within HMPREF1058_RS05460at 161.714 kb on - strand, within HMPREF1058_RS05460

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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159,360 + HMPREF1058_RS05470 0.61 -0.4
159,494 + HMPREF1058_RS05470 0.69 +0.1
159,494 + HMPREF1058_RS05470 0.69 -0.5
159,494 + HMPREF1058_RS05470 0.69 +0.9
159,494 + HMPREF1058_RS05470 0.69 -0.2
159,495 - HMPREF1058_RS05470 0.69 -0.4
159,495 - HMPREF1058_RS05470 0.69 +0.4
159,495 - HMPREF1058_RS05470 0.69 -1.5
159,495 - HMPREF1058_RS05470 0.69 -0.3
159,495 - HMPREF1058_RS05470 0.69 +0.0
159,939 + -0.0
159,940 - -1.2
160,008 - -0.7
160,048 - -0.4
160,121 + +1.8
160,122 - -0.6
160,122 - +0.1
160,229 + +0.2
160,236 - -0.7
160,252 - -0.4
160,331 - HMPREF1058_RS05465 0.24 -0.8
160,557 + HMPREF1058_RS05465 0.64 -0.5
160,558 - HMPREF1058_RS05465 0.65 -0.0
160,558 - HMPREF1058_RS05465 0.65 -1.5
160,566 + HMPREF1058_RS05465 0.66 -1.6
160,580 + HMPREF1058_RS05465 0.68 -0.7
160,596 + HMPREF1058_RS05465 0.71 -0.5
160,713 + +0.0
160,768 - +0.0
160,768 - -0.2
160,769 + +0.0
160,770 - +1.2
160,790 - +0.9
160,790 - -0.2
160,810 + +0.2
160,811 - -0.9
160,812 + +0.9
160,813 - -0.6
160,813 - +1.1
160,813 - +0.5
160,813 - -1.0
160,890 + +2.1
160,891 - +0.5
160,901 + -1.9
161,088 + HMPREF1058_RS05460 0.18 +0.3
161,088 + HMPREF1058_RS05460 0.18 +0.6
161,274 + HMPREF1058_RS05460 0.33 -0.2
161,335 - HMPREF1058_RS05460 0.39 +0.7
161,425 + HMPREF1058_RS05460 0.46 +0.3
161,518 - HMPREF1058_RS05460 0.54 -0.6
161,561 + HMPREF1058_RS05460 0.58 -1.3
161,561 + HMPREF1058_RS05460 0.58 -0.1
161,668 + HMPREF1058_RS05460 0.67 -0.6
161,701 - HMPREF1058_RS05460 0.70 -0.4
161,714 - HMPREF1058_RS05460 0.71 -0.1

Or see this region's nucleotide sequence