Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05470 and HMPREF1058_RS05465 are separated by 212 nucleotides HMPREF1058_RS05465 and HMPREF1058_RS05460 are separated by 126 nucleotides
HMPREF1058_RS05470: HMPREF1058_RS05470 - carboxymuconolactone decarboxylase family protein, at 158,378 to 159,985
_RS05470
HMPREF1058_RS05465: HMPREF1058_RS05465 - DNA-binding protein, at 160,198 to 160,755
_RS05465
HMPREF1058_RS05460: HMPREF1058_RS05460 - aldo/keto reductase, at 160,882 to 162,054
_RS05460
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.360 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.494 kb on + strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.495 kb on - strand, within HMPREF1058_RS05470 at 159.939 kb on + strand at 159.940 kb on - strand at 160.008 kb on - strand at 160.048 kb on - strand at 160.121 kb on + strand at 160.122 kb on - strand at 160.122 kb on - strand at 160.229 kb on + strand at 160.236 kb on - strand at 160.252 kb on - strand at 160.331 kb on - strand, within HMPREF1058_RS05465 at 160.557 kb on + strand, within HMPREF1058_RS05465 at 160.558 kb on - strand, within HMPREF1058_RS05465 at 160.558 kb on - strand, within HMPREF1058_RS05465 at 160.566 kb on + strand, within HMPREF1058_RS05465 at 160.580 kb on + strand, within HMPREF1058_RS05465 at 160.596 kb on + strand, within HMPREF1058_RS05465 at 160.713 kb on + strand at 160.768 kb on - strand at 160.768 kb on - strand at 160.769 kb on + strand at 160.770 kb on - strand at 160.790 kb on - strand at 160.790 kb on - strand at 160.810 kb on + strand at 160.811 kb on - strand at 160.812 kb on + strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.813 kb on - strand at 160.890 kb on + strand at 160.891 kb on - strand at 160.901 kb on + strand at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.088 kb on + strand, within HMPREF1058_RS05460 at 161.274 kb on + strand, within HMPREF1058_RS05460 at 161.335 kb on - strand, within HMPREF1058_RS05460 at 161.425 kb on + strand, within HMPREF1058_RS05460 at 161.518 kb on - strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.561 kb on + strand, within HMPREF1058_RS05460 at 161.668 kb on + strand, within HMPREF1058_RS05460 at 161.701 kb on - strand, within HMPREF1058_RS05460 at 161.714 kb on - strand, within HMPREF1058_RS05460
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 159,360 + HMPREF1058_RS05470 0.61 -0.4 159,494 + HMPREF1058_RS05470 0.69 +0.1 159,494 + HMPREF1058_RS05470 0.69 -0.5 159,494 + HMPREF1058_RS05470 0.69 +0.9 159,494 + HMPREF1058_RS05470 0.69 -0.2 159,495 - HMPREF1058_RS05470 0.69 -0.4 159,495 - HMPREF1058_RS05470 0.69 +0.4 159,495 - HMPREF1058_RS05470 0.69 -1.5 159,495 - HMPREF1058_RS05470 0.69 -0.3 159,495 - HMPREF1058_RS05470 0.69 +0.0 159,939 + -0.0 159,940 - -1.2 160,008 - -0.7 160,048 - -0.4 160,121 + +1.8 160,122 - -0.6 160,122 - +0.1 160,229 + +0.2 160,236 - -0.7 160,252 - -0.4 160,331 - HMPREF1058_RS05465 0.24 -0.8 160,557 + HMPREF1058_RS05465 0.64 -0.5 160,558 - HMPREF1058_RS05465 0.65 -0.0 160,558 - HMPREF1058_RS05465 0.65 -1.5 160,566 + HMPREF1058_RS05465 0.66 -1.6 160,580 + HMPREF1058_RS05465 0.68 -0.7 160,596 + HMPREF1058_RS05465 0.71 -0.5 160,713 + +0.0 160,768 - +0.0 160,768 - -0.2 160,769 + +0.0 160,770 - +1.2 160,790 - +0.9 160,790 - -0.2 160,810 + +0.2 160,811 - -0.9 160,812 + +0.9 160,813 - -0.6 160,813 - +1.1 160,813 - +0.5 160,813 - -1.0 160,890 + +2.1 160,891 - +0.5 160,901 + -1.9 161,088 + HMPREF1058_RS05460 0.18 +0.3 161,088 + HMPREF1058_RS05460 0.18 +0.6 161,274 + HMPREF1058_RS05460 0.33 -0.2 161,335 - HMPREF1058_RS05460 0.39 +0.7 161,425 + HMPREF1058_RS05460 0.46 +0.3 161,518 - HMPREF1058_RS05460 0.54 -0.6 161,561 + HMPREF1058_RS05460 0.58 -1.3 161,561 + HMPREF1058_RS05460 0.58 -0.1 161,668 + HMPREF1058_RS05460 0.67 -0.6 161,701 - HMPREF1058_RS05460 0.70 -0.4 161,714 - HMPREF1058_RS05460 0.71 -0.1
Or see this region's nucleotide sequence