Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05145 and HMPREF1058_RS05140 are separated by 42 nucleotides HMPREF1058_RS05140 and HMPREF1058_RS05135 are separated by 214 nucleotides
HMPREF1058_RS05145: HMPREF1058_RS05145 - ATP-binding protein, at 232,281 to 233,459
_RS05145
HMPREF1058_RS05140: HMPREF1058_RS05140 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 233,502 to 237,047
_RS05140
HMPREF1058_RS05135: HMPREF1058_RS05135 - arylsulfatase, at 237,262 to 238,779
_RS05135
Position (kb) 233
234
235
236
237
238 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 232.504 kb on - strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.638 kb on - strand, within HMPREF1058_RS05145 at 232.707 kb on - strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.848 kb on + strand, within HMPREF1058_RS05145 at 232.879 kb on - strand, within HMPREF1058_RS05145 at 232.948 kb on + strand, within HMPREF1058_RS05145 at 232.952 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.955 kb on - strand, within HMPREF1058_RS05145 at 232.996 kb on + strand, within HMPREF1058_RS05145 at 233.010 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.372 kb on + strand at 233.388 kb on + strand at 233.452 kb on + strand at 233.556 kb on - strand at 233.556 kb on - strand at 233.562 kb on + strand at 233.585 kb on + strand at 233.792 kb on + strand at 233.830 kb on + strand at 233.840 kb on - strand at 233.849 kb on + strand at 233.944 kb on + strand, within HMPREF1058_RS05140 at 233.985 kb on - strand, within HMPREF1058_RS05140 at 234.235 kb on + strand, within HMPREF1058_RS05140 at 234.412 kb on + strand at 234.462 kb on - strand, within HMPREF1058_RS05140 at 234.498 kb on - strand, within HMPREF1058_RS05140 at 234.498 kb on - strand, within HMPREF1058_RS05140 at 234.796 kb on + strand, within HMPREF1058_RS05140 at 234.940 kb on - strand, within HMPREF1058_RS05140 at 234.977 kb on - strand, within HMPREF1058_RS05140 at 235.308 kb on + strand, within HMPREF1058_RS05140 at 235.594 kb on - strand, within HMPREF1058_RS05140 at 235.594 kb on - strand, within HMPREF1058_RS05140 at 235.854 kb on - strand, within HMPREF1058_RS05140 at 236.072 kb on + strand, within HMPREF1058_RS05140 at 236.076 kb on - strand, within HMPREF1058_RS05140 at 236.180 kb on + strand, within HMPREF1058_RS05140 at 236.373 kb on + strand, within HMPREF1058_RS05140 at 236.581 kb on + strand, within HMPREF1058_RS05140 at 236.616 kb on + strand, within HMPREF1058_RS05140 at 236.627 kb on - strand, within HMPREF1058_RS05140 at 236.627 kb on - strand, within HMPREF1058_RS05140 at 236.969 kb on - strand at 237.045 kb on + strand at 237.063 kb on + strand at 237.064 kb on - strand at 237.065 kb on + strand at 237.121 kb on + strand at 237.122 kb on - strand at 237.124 kb on + strand at 237.124 kb on + strand at 237.125 kb on - strand at 237.125 kb on - strand at 237.126 kb on + strand at 237.126 kb on + strand at 237.127 kb on - strand at 237.129 kb on - strand at 237.146 kb on + strand at 237.146 kb on + strand at 237.146 kb on + strand at 237.146 kb on + strand at 237.146 kb on + strand at 237.147 kb on - strand at 237.147 kb on - strand at 237.147 kb on - strand at 237.176 kb on - strand at 237.200 kb on - strand at 237.239 kb on - strand at 237.239 kb on - strand at 237.267 kb on + strand at 237.273 kb on - strand at 237.574 kb on - strand, within HMPREF1058_RS05135 at 237.577 kb on + strand, within HMPREF1058_RS05135 at 237.578 kb on - strand, within HMPREF1058_RS05135 at 237.683 kb on + strand at 237.783 kb on - strand, within HMPREF1058_RS05135 at 237.807 kb on + strand, within HMPREF1058_RS05135 at 237.807 kb on + strand, within HMPREF1058_RS05135 at 237.813 kb on + strand, within HMPREF1058_RS05135 at 237.837 kb on + strand, within HMPREF1058_RS05135 at 237.837 kb on + strand, within HMPREF1058_RS05135 at 237.838 kb on - strand, within HMPREF1058_RS05135 at 237.970 kb on + strand, within HMPREF1058_RS05135 at 237.970 kb on + strand, within HMPREF1058_RS05135 at 237.970 kb on + strand, within HMPREF1058_RS05135 at 238.035 kb on - strand, within HMPREF1058_RS05135
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 232,504 - HMPREF1058_RS05145 0.19 +0.1 232,505 + HMPREF1058_RS05145 0.19 -0.9 232,505 + HMPREF1058_RS05145 0.19 -2.4 232,638 - HMPREF1058_RS05145 0.30 +2.3 232,707 - HMPREF1058_RS05145 0.36 -0.4 232,773 + HMPREF1058_RS05145 0.42 -1.6 232,773 + HMPREF1058_RS05145 0.42 +0.4 232,848 + HMPREF1058_RS05145 0.48 -1.5 232,879 - HMPREF1058_RS05145 0.51 -1.4 232,948 + HMPREF1058_RS05145 0.57 +1.7 232,952 + HMPREF1058_RS05145 0.57 -1.0 232,954 + HMPREF1058_RS05145 0.57 -1.3 232,954 + HMPREF1058_RS05145 0.57 -0.3 232,954 + HMPREF1058_RS05145 0.57 -0.0 232,954 + HMPREF1058_RS05145 0.57 +0.1 232,955 - HMPREF1058_RS05145 0.57 -2.2 232,996 + HMPREF1058_RS05145 0.61 +0.2 233,010 + HMPREF1058_RS05145 0.62 -2.4 233,291 + HMPREF1058_RS05145 0.86 -1.2 233,291 + HMPREF1058_RS05145 0.86 +0.8 233,372 + +2.7 233,388 + -1.3 233,452 + +0.4 233,556 - +2.1 233,556 - +0.1 233,562 + -1.3 233,585 + +0.1 233,792 + +1.1 233,830 + -0.7 233,840 - -1.4 233,849 + -1.5 233,944 + HMPREF1058_RS05140 0.12 -1.5 233,985 - HMPREF1058_RS05140 0.14 +0.7 234,235 + HMPREF1058_RS05140 0.21 -0.7 234,412 + -1.3 234,462 - HMPREF1058_RS05140 0.27 -1.3 234,498 - HMPREF1058_RS05140 0.28 -1.8 234,498 - HMPREF1058_RS05140 0.28 -1.1 234,796 + HMPREF1058_RS05140 0.36 -2.5 234,940 - HMPREF1058_RS05140 0.41 -1.5 234,977 - HMPREF1058_RS05140 0.42 -0.9 235,308 + HMPREF1058_RS05140 0.51 -1.4 235,594 - HMPREF1058_RS05140 0.59 -0.3 235,594 - HMPREF1058_RS05140 0.59 -2.7 235,854 - HMPREF1058_RS05140 0.66 -1.1 236,072 + HMPREF1058_RS05140 0.72 -2.6 236,076 - HMPREF1058_RS05140 0.73 -0.3 236,180 + HMPREF1058_RS05140 0.76 -2.1 236,373 + HMPREF1058_RS05140 0.81 -0.5 236,581 + HMPREF1058_RS05140 0.87 -0.7 236,616 + HMPREF1058_RS05140 0.88 -1.6 236,627 - HMPREF1058_RS05140 0.88 -0.5 236,627 - HMPREF1058_RS05140 0.88 -0.9 236,969 - +1.1 237,045 + +0.0 237,063 + +3.1 237,064 - -0.7 237,065 + -0.5 237,121 + +1.9 237,122 - +0.7 237,124 + +0.1 237,124 + +0.4 237,125 - +0.3 237,125 - -0.4 237,126 + -0.1 237,126 + +0.4 237,127 - +0.3 237,129 - +0.3 237,146 + +1.4 237,146 + -0.6 237,146 + -0.6 237,146 + +0.3 237,146 + +0.3 237,147 - +0.2 237,147 - +0.8 237,147 - +0.9 237,176 - +0.7 237,200 - -0.0 237,239 - +0.1 237,239 - +0.7 237,267 + -0.4 237,273 - +0.2 237,574 - HMPREF1058_RS05135 0.21 -0.2 237,577 + HMPREF1058_RS05135 0.21 +0.2 237,578 - HMPREF1058_RS05135 0.21 -0.7 237,683 + +0.1 237,783 - HMPREF1058_RS05135 0.34 +0.1 237,807 + HMPREF1058_RS05135 0.36 -0.4 237,807 + HMPREF1058_RS05135 0.36 -1.7 237,813 + HMPREF1058_RS05135 0.36 -0.8 237,837 + HMPREF1058_RS05135 0.38 -0.9 237,837 + HMPREF1058_RS05135 0.38 +0.2 237,838 - HMPREF1058_RS05135 0.38 +0.7 237,970 + HMPREF1058_RS05135 0.47 -0.0 237,970 + HMPREF1058_RS05135 0.47 +0.7 237,970 + HMPREF1058_RS05135 0.47 -0.7 238,035 - HMPREF1058_RS05135 0.51 +3.1
Or see this region's nucleotide sequence