Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04085 and HMPREF1058_RS04080 are separated by 283 nucleotides HMPREF1058_RS04080 and HMPREF1058_RS04075 are separated by 249 nucleotides
HMPREF1058_RS04085: HMPREF1058_RS04085 - HU family DNA-binding protein, at 118,282 to 119,712
_RS04085
HMPREF1058_RS04080: HMPREF1058_RS04080 - AAA family ATPase, at 119,996 to 120,991
_RS04080
HMPREF1058_RS04075: HMPREF1058_RS04075 - DUF58 domain-containing protein, at 121,241 to 122,110
_RS04075
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 119.100 kb on - strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.102 kb on + strand, within HMPREF1058_RS04085 at 119.205 kb on + strand, within HMPREF1058_RS04085 at 119.246 kb on + strand, within HMPREF1058_RS04085 at 119.249 kb on - strand, within HMPREF1058_RS04085 at 119.249 kb on - strand, within HMPREF1058_RS04085 at 119.370 kb on + strand, within HMPREF1058_RS04085 at 119.371 kb on - strand, within HMPREF1058_RS04085 at 119.438 kb on + strand, within HMPREF1058_RS04085 at 119.439 kb on - strand at 119.439 kb on - strand, within HMPREF1058_RS04085 at 119.513 kb on + strand, within HMPREF1058_RS04085 at 119.513 kb on + strand, within HMPREF1058_RS04085 at 119.514 kb on - strand, within HMPREF1058_RS04085 at 119.525 kb on + strand, within HMPREF1058_RS04085 at 119.541 kb on + strand, within HMPREF1058_RS04085 at 119.545 kb on + strand, within HMPREF1058_RS04085 at 119.594 kb on - strand at 119.646 kb on + strand at 119.646 kb on + strand at 119.647 kb on - strand at 119.746 kb on + strand at 119.858 kb on - strand at 119.981 kb on + strand at 120.093 kb on + strand at 120.120 kb on + strand, within HMPREF1058_RS04080 at 120.121 kb on - strand, within HMPREF1058_RS04080 at 120.132 kb on + strand, within HMPREF1058_RS04080 at 120.224 kb on + strand, within HMPREF1058_RS04080 at 120.359 kb on - strand, within HMPREF1058_RS04080 at 120.440 kb on - strand, within HMPREF1058_RS04080 at 120.462 kb on + strand, within HMPREF1058_RS04080 at 120.678 kb on - strand, within HMPREF1058_RS04080 at 120.694 kb on - strand, within HMPREF1058_RS04080 at 120.701 kb on + strand, within HMPREF1058_RS04080 at 120.702 kb on - strand, within HMPREF1058_RS04080 at 120.827 kb on + strand, within HMPREF1058_RS04080 at 120.828 kb on - strand, within HMPREF1058_RS04080 at 121.016 kb on - strand at 121.220 kb on - strand at 121.228 kb on + strand at 121.228 kb on + strand at 121.229 kb on - strand at 121.229 kb on - strand at 121.231 kb on + strand at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.739 kb on + strand, within HMPREF1058_RS04075 at 121.795 kb on - strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 119,100 - HMPREF1058_RS04085 0.57 -1.2 119,102 + HMPREF1058_RS04085 0.57 +1.1 119,102 + HMPREF1058_RS04085 0.57 +0.3 119,102 + HMPREF1058_RS04085 0.57 -2.1 119,205 + HMPREF1058_RS04085 0.65 +0.3 119,246 + HMPREF1058_RS04085 0.67 +0.1 119,249 - HMPREF1058_RS04085 0.68 +0.0 119,249 - HMPREF1058_RS04085 0.68 -0.9 119,370 + HMPREF1058_RS04085 0.76 -2.2 119,371 - HMPREF1058_RS04085 0.76 +1.0 119,438 + HMPREF1058_RS04085 0.81 +0.9 119,439 - +2.0 119,439 - HMPREF1058_RS04085 0.81 -0.4 119,513 + HMPREF1058_RS04085 0.86 -0.9 119,513 + HMPREF1058_RS04085 0.86 -0.4 119,514 - HMPREF1058_RS04085 0.86 -0.2 119,525 + HMPREF1058_RS04085 0.87 -0.2 119,541 + HMPREF1058_RS04085 0.88 +0.4 119,545 + HMPREF1058_RS04085 0.88 -1.2 119,594 - -0.2 119,646 + -0.1 119,646 + +1.2 119,647 - +0.2 119,746 + +1.8 119,858 - +0.8 119,981 + -1.9 120,093 + -2.1 120,120 + HMPREF1058_RS04080 0.12 +1.1 120,121 - HMPREF1058_RS04080 0.13 +0.4 120,132 + HMPREF1058_RS04080 0.14 +0.7 120,224 + HMPREF1058_RS04080 0.23 -0.8 120,359 - HMPREF1058_RS04080 0.36 +0.4 120,440 - HMPREF1058_RS04080 0.45 -2.9 120,462 + HMPREF1058_RS04080 0.47 -1.6 120,678 - HMPREF1058_RS04080 0.68 -1.3 120,694 - HMPREF1058_RS04080 0.70 -1.3 120,701 + HMPREF1058_RS04080 0.71 +1.0 120,702 - HMPREF1058_RS04080 0.71 +0.9 120,827 + HMPREF1058_RS04080 0.83 -1.4 120,828 - HMPREF1058_RS04080 0.84 +2.0 121,016 - -0.6 121,220 - -0.9 121,228 + -0.6 121,228 + +0.6 121,229 - -2.0 121,229 - +0.2 121,231 + -1.3 121,670 + HMPREF1058_RS04075 0.49 -1.3 121,670 + HMPREF1058_RS04075 0.49 +2.0 121,739 + HMPREF1058_RS04075 0.57 -0.3 121,795 - HMPREF1058_RS04075 0.64 -0.8 121,865 + HMPREF1058_RS04075 0.72 -1.4 121,865 + HMPREF1058_RS04075 0.72 -1.7
Or see this region's nucleotide sequence