Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04080 and HMPREF1058_RS04075 are separated by 249 nucleotides HMPREF1058_RS04075 and HMPREF1058_RS04070 are separated by 5 nucleotides
HMPREF1058_RS04080: HMPREF1058_RS04080 - AAA family ATPase, at 119,996 to 120,991
_RS04080
HMPREF1058_RS04075: HMPREF1058_RS04075 - DUF58 domain-containing protein, at 121,241 to 122,110
_RS04075
HMPREF1058_RS04070: HMPREF1058_RS04070 - hypothetical protein, at 122,116 to 123,213
_RS04070
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 120.359 kb on - strand, within HMPREF1058_RS04080 at 120.440 kb on - strand, within HMPREF1058_RS04080 at 120.462 kb on + strand, within HMPREF1058_RS04080 at 120.678 kb on - strand, within HMPREF1058_RS04080 at 120.694 kb on - strand, within HMPREF1058_RS04080 at 120.701 kb on + strand, within HMPREF1058_RS04080 at 120.702 kb on - strand, within HMPREF1058_RS04080 at 120.827 kb on + strand, within HMPREF1058_RS04080 at 120.828 kb on - strand, within HMPREF1058_RS04080 at 121.016 kb on - strand at 121.220 kb on - strand at 121.228 kb on + strand at 121.228 kb on + strand at 121.229 kb on - strand at 121.229 kb on - strand at 121.231 kb on + strand at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.739 kb on + strand, within HMPREF1058_RS04075 at 121.795 kb on - strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 122.123 kb on + strand at 122.124 kb on - strand at 122.395 kb on - strand, within HMPREF1058_RS04070 at 122.415 kb on + strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.579 kb on + strand, within HMPREF1058_RS04070 at 122.613 kb on - strand, within HMPREF1058_RS04070 at 122.654 kb on - strand, within HMPREF1058_RS04070 at 122.667 kb on - strand, within HMPREF1058_RS04070 at 122.800 kb on + strand, within HMPREF1058_RS04070 at 122.939 kb on - strand, within HMPREF1058_RS04070
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 120,359 - HMPREF1058_RS04080 0.36 +0.4 120,440 - HMPREF1058_RS04080 0.45 -2.9 120,462 + HMPREF1058_RS04080 0.47 -1.6 120,678 - HMPREF1058_RS04080 0.68 -1.3 120,694 - HMPREF1058_RS04080 0.70 -1.3 120,701 + HMPREF1058_RS04080 0.71 +1.0 120,702 - HMPREF1058_RS04080 0.71 +0.9 120,827 + HMPREF1058_RS04080 0.83 -1.4 120,828 - HMPREF1058_RS04080 0.84 +2.0 121,016 - -0.6 121,220 - -0.9 121,228 + -0.6 121,228 + +0.6 121,229 - -2.0 121,229 - +0.2 121,231 + -1.3 121,670 + HMPREF1058_RS04075 0.49 -1.3 121,670 + HMPREF1058_RS04075 0.49 +2.0 121,739 + HMPREF1058_RS04075 0.57 -0.3 121,795 - HMPREF1058_RS04075 0.64 -0.8 121,865 + HMPREF1058_RS04075 0.72 -1.4 121,865 + HMPREF1058_RS04075 0.72 -1.7 122,123 + +0.7 122,124 - +1.7 122,395 - HMPREF1058_RS04070 0.25 +0.0 122,415 + HMPREF1058_RS04070 0.27 -1.0 122,533 - HMPREF1058_RS04070 0.38 +2.0 122,533 - HMPREF1058_RS04070 0.38 +2.0 122,579 + HMPREF1058_RS04070 0.42 -2.4 122,613 - HMPREF1058_RS04070 0.45 -1.3 122,654 - HMPREF1058_RS04070 0.49 -2.9 122,667 - HMPREF1058_RS04070 0.50 -0.6 122,800 + HMPREF1058_RS04070 0.62 -0.6 122,939 - HMPREF1058_RS04070 0.75 +3.0
Or see this region's nucleotide sequence