Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04070

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
121,220	-				-0.9
121,228	+				-0.6
121,228	+				+0.6
121,229	-				-2.0
121,229	-				+0.2
121,231	+				-1.3
121,670	+		HMPREF1058_RS04075	0.49	-1.3
121,670	+		HMPREF1058_RS04075	0.49	+2.0
121,739	+		HMPREF1058_RS04075	0.57	-0.3
121,795	-		HMPREF1058_RS04075	0.64	-0.8
121,865	+		HMPREF1058_RS04075	0.72	-1.4
121,865	+		HMPREF1058_RS04075	0.72	-1.7
122,123	+				+0.7
122,124	-				+1.7
122,395	-		HMPREF1058_RS04070	0.25	+0.0
122,415	+		HMPREF1058_RS04070	0.27	-1.0
122,533	-		HMPREF1058_RS04070	0.38	+2.0
122,533	-		HMPREF1058_RS04070	0.38	+2.0
122,579	+		HMPREF1058_RS04070	0.42	-2.4
122,613	-		HMPREF1058_RS04070	0.45	-1.3
122,654	-		HMPREF1058_RS04070	0.49	-2.9
122,667	-		HMPREF1058_RS04070	0.50	-0.6
122,800	+		HMPREF1058_RS04070	0.62	-0.6
122,939	-		HMPREF1058_RS04070	0.75	+3.0
123,175	+				+1.0
123,194	+				+0.1
123,196	+				+1.3
123,196	+				+0.5
123,196	+				-0.9
123,196	+				+0.2
123,196	+				-0.3
123,197	-				-0.6
123,284	+				-1.1
123,284	+				-0.6
123,285	-				+0.4
123,285	-				-1.0
123,289	-				+0.0
123,292	-				-1.0
123,486	+		HMPREF1058_RS04065	0.25	-2.8
123,529	+		HMPREF1058_RS04065	0.30	-0.8
124,089	+		HMPREF1058_RS04065	0.86	-1.1