Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04070

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04075 and HMPREF1058_RS04070 are separated by 5 nucleotidesHMPREF1058_RS04070 and HMPREF1058_RS04065 are separated by 19 nucleotides HMPREF1058_RS04075: HMPREF1058_RS04075 - DUF58 domain-containing protein, at 121,241 to 122,110 _RS04075 HMPREF1058_RS04070: HMPREF1058_RS04070 - hypothetical protein, at 122,116 to 123,213 _RS04070 HMPREF1058_RS04065: HMPREF1058_RS04065 - VWA domain-containing protein, at 123,233 to 124,231 _RS04065 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.220 kb on - strandat 121.228 kb on + strandat 121.228 kb on + strandat 121.229 kb on - strandat 121.229 kb on - strandat 121.231 kb on + strandat 121.670 kb on + strand, within HMPREF1058_RS04075at 121.670 kb on + strand, within HMPREF1058_RS04075at 121.739 kb on + strand, within HMPREF1058_RS04075at 121.795 kb on - strand, within HMPREF1058_RS04075at 121.865 kb on + strand, within HMPREF1058_RS04075at 121.865 kb on + strand, within HMPREF1058_RS04075at 122.123 kb on + strandat 122.124 kb on - strandat 122.395 kb on - strand, within HMPREF1058_RS04070at 122.415 kb on + strand, within HMPREF1058_RS04070at 122.533 kb on - strand, within HMPREF1058_RS04070at 122.533 kb on - strand, within HMPREF1058_RS04070at 122.579 kb on + strand, within HMPREF1058_RS04070at 122.613 kb on - strand, within HMPREF1058_RS04070at 122.654 kb on - strand, within HMPREF1058_RS04070at 122.667 kb on - strand, within HMPREF1058_RS04070at 122.800 kb on + strand, within HMPREF1058_RS04070at 122.939 kb on - strand, within HMPREF1058_RS04070at 123.175 kb on + strandat 123.194 kb on + strandat 123.196 kb on + strandat 123.196 kb on + strandat 123.196 kb on + strandat 123.196 kb on + strandat 123.196 kb on + strandat 123.197 kb on - strandat 123.284 kb on + strandat 123.284 kb on + strandat 123.285 kb on - strandat 123.285 kb on - strandat 123.289 kb on - strandat 123.292 kb on - strandat 123.486 kb on + strand, within HMPREF1058_RS04065at 123.529 kb on + strand, within HMPREF1058_RS04065at 124.089 kb on + strand, within HMPREF1058_RS04065

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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121,220 - -0.9
121,228 + -0.6
121,228 + +0.6
121,229 - -2.0
121,229 - +0.2
121,231 + -1.3
121,670 + HMPREF1058_RS04075 0.49 -1.3
121,670 + HMPREF1058_RS04075 0.49 +2.0
121,739 + HMPREF1058_RS04075 0.57 -0.3
121,795 - HMPREF1058_RS04075 0.64 -0.8
121,865 + HMPREF1058_RS04075 0.72 -1.4
121,865 + HMPREF1058_RS04075 0.72 -1.7
122,123 + +0.7
122,124 - +1.7
122,395 - HMPREF1058_RS04070 0.25 +0.0
122,415 + HMPREF1058_RS04070 0.27 -1.0
122,533 - HMPREF1058_RS04070 0.38 +2.0
122,533 - HMPREF1058_RS04070 0.38 +2.0
122,579 + HMPREF1058_RS04070 0.42 -2.4
122,613 - HMPREF1058_RS04070 0.45 -1.3
122,654 - HMPREF1058_RS04070 0.49 -2.9
122,667 - HMPREF1058_RS04070 0.50 -0.6
122,800 + HMPREF1058_RS04070 0.62 -0.6
122,939 - HMPREF1058_RS04070 0.75 +3.0
123,175 + +1.0
123,194 + +0.1
123,196 + +1.3
123,196 + +0.5
123,196 + -0.9
123,196 + +0.2
123,196 + -0.3
123,197 - -0.6
123,284 + -1.1
123,284 + -0.6
123,285 - +0.4
123,285 - -1.0
123,289 - +0.0
123,292 - -1.0
123,486 + HMPREF1058_RS04065 0.25 -2.8
123,529 + HMPREF1058_RS04065 0.30 -0.8
124,089 + HMPREF1058_RS04065 0.86 -1.1

Or see this region's nucleotide sequence