Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04075 and HMPREF1058_RS04070 are separated by 5 nucleotides HMPREF1058_RS04070 and HMPREF1058_RS04065 are separated by 19 nucleotides
HMPREF1058_RS04075: HMPREF1058_RS04075 - DUF58 domain-containing protein, at 121,241 to 122,110
_RS04075
HMPREF1058_RS04070: HMPREF1058_RS04070 - hypothetical protein, at 122,116 to 123,213
_RS04070
HMPREF1058_RS04065: HMPREF1058_RS04065 - VWA domain-containing protein, at 123,233 to 124,231
_RS04065
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 121.220 kb on - strand at 121.228 kb on + strand at 121.228 kb on + strand at 121.229 kb on - strand at 121.229 kb on - strand at 121.231 kb on + strand at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.739 kb on + strand, within HMPREF1058_RS04075 at 121.795 kb on - strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 122.123 kb on + strand at 122.124 kb on - strand at 122.395 kb on - strand, within HMPREF1058_RS04070 at 122.415 kb on + strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.579 kb on + strand, within HMPREF1058_RS04070 at 122.613 kb on - strand, within HMPREF1058_RS04070 at 122.654 kb on - strand, within HMPREF1058_RS04070 at 122.667 kb on - strand, within HMPREF1058_RS04070 at 122.800 kb on + strand, within HMPREF1058_RS04070 at 122.939 kb on - strand, within HMPREF1058_RS04070 at 123.175 kb on + strand at 123.194 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.197 kb on - strand at 123.284 kb on + strand at 123.284 kb on + strand at 123.285 kb on - strand at 123.285 kb on - strand at 123.289 kb on - strand at 123.292 kb on - strand at 123.486 kb on + strand, within HMPREF1058_RS04065 at 123.529 kb on + strand, within HMPREF1058_RS04065 at 124.089 kb on + strand, within HMPREF1058_RS04065
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 121,220 - -0.9 121,228 + -0.6 121,228 + +0.6 121,229 - -2.0 121,229 - +0.2 121,231 + -1.3 121,670 + HMPREF1058_RS04075 0.49 -1.3 121,670 + HMPREF1058_RS04075 0.49 +2.0 121,739 + HMPREF1058_RS04075 0.57 -0.3 121,795 - HMPREF1058_RS04075 0.64 -0.8 121,865 + HMPREF1058_RS04075 0.72 -1.4 121,865 + HMPREF1058_RS04075 0.72 -1.7 122,123 + +0.7 122,124 - +1.7 122,395 - HMPREF1058_RS04070 0.25 +0.0 122,415 + HMPREF1058_RS04070 0.27 -1.0 122,533 - HMPREF1058_RS04070 0.38 +2.0 122,533 - HMPREF1058_RS04070 0.38 +2.0 122,579 + HMPREF1058_RS04070 0.42 -2.4 122,613 - HMPREF1058_RS04070 0.45 -1.3 122,654 - HMPREF1058_RS04070 0.49 -2.9 122,667 - HMPREF1058_RS04070 0.50 -0.6 122,800 + HMPREF1058_RS04070 0.62 -0.6 122,939 - HMPREF1058_RS04070 0.75 +3.0 123,175 + +1.0 123,194 + +0.1 123,196 + +1.3 123,196 + +0.5 123,196 + -0.9 123,196 + +0.2 123,196 + -0.3 123,197 - -0.6 123,284 + -1.1 123,284 + -0.6 123,285 - +0.4 123,285 - -1.0 123,289 - +0.0 123,292 - -1.0 123,486 + HMPREF1058_RS04065 0.25 -2.8 123,529 + HMPREF1058_RS04065 0.30 -0.8 124,089 + HMPREF1058_RS04065 0.86 -1.1
Or see this region's nucleotide sequence