Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotides HMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotides HMPREF1058_RS03785 and HMPREF1058_RS03780 overlap by 29 nucleotides
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592
_RS03790
HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443
_RS03785
HMPREF1058_RS03780: HMPREF1058_RS03780 - DUF1460 domain-containing protein, at 187,415 to 188,299
_RS03780
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.011 kb on - strand, within HMPREF1058_RS03795 at 185.014 kb on - strand, within HMPREF1058_RS03795 at 185.094 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.180 kb on - strand, within HMPREF1058_RS03795 at 185.388 kb on - strand, within HMPREF1058_RS03795 at 185.423 kb on + strand, within HMPREF1058_RS03795 at 185.479 kb on + strand, within HMPREF1058_RS03795 at 185.553 kb on + strand, within HMPREF1058_RS03795 at 185.558 kb on - strand, within HMPREF1058_RS03795 at 185.582 kb on - strand, within HMPREF1058_RS03795 at 185.662 kb on + strand, within HMPREF1058_RS03795 at 185.841 kb on + strand at 185.841 kb on + strand at 185.854 kb on + strand at 185.855 kb on - strand at 185.899 kb on - strand at 185.911 kb on + strand at 185.912 kb on - strand at 185.944 kb on + strand at 185.945 kb on - strand, within HMPREF1058_RS03790 at 185.948 kb on - strand, within HMPREF1058_RS03790 at 186.025 kb on + strand, within HMPREF1058_RS03790 at 186.068 kb on - strand, within HMPREF1058_RS03790 at 186.161 kb on - strand, within HMPREF1058_RS03790 at 186.181 kb on - strand, within HMPREF1058_RS03790 at 186.276 kb on + strand, within HMPREF1058_RS03790 at 186.304 kb on - strand, within HMPREF1058_RS03790 at 186.312 kb on - strand, within HMPREF1058_RS03790 at 186.320 kb on - strand, within HMPREF1058_RS03790 at 186.410 kb on - strand, within HMPREF1058_RS03790 at 186.432 kb on + strand, within HMPREF1058_RS03790 at 186.433 kb on - strand, within HMPREF1058_RS03790 at 186.465 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.534 kb on + strand at 186.535 kb on - strand at 186.535 kb on - strand at 186.536 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.542 kb on + strand at 186.542 kb on + strand at 186.543 kb on - strand at 186.610 kb on + strand at 186.611 kb on - strand at 186.662 kb on + strand at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.875 kb on + strand, within HMPREF1058_RS03785 at 186.875 kb on + strand at 186.876 kb on - strand, within HMPREF1058_RS03785 at 186.900 kb on + strand, within HMPREF1058_RS03785 at 186.969 kb on + strand, within HMPREF1058_RS03785 at 186.992 kb on + strand, within HMPREF1058_RS03785 at 186.992 kb on + strand, within HMPREF1058_RS03785 at 187.203 kb on + strand, within HMPREF1058_RS03785 at 187.203 kb on + strand, within HMPREF1058_RS03785 at 187.207 kb on + strand, within HMPREF1058_RS03785 at 187.208 kb on - strand, within HMPREF1058_RS03785 at 187.223 kb on + strand, within HMPREF1058_RS03785 at 187.224 kb on - strand, within HMPREF1058_RS03785 at 187.336 kb on + strand, within HMPREF1058_RS03785 at 187.337 kb on - strand, within HMPREF1058_RS03785 at 187.345 kb on - strand, within HMPREF1058_RS03785 at 187.362 kb on - strand, within HMPREF1058_RS03785 at 187.362 kb on - strand, within HMPREF1058_RS03785 at 187.366 kb on + strand, within HMPREF1058_RS03785 at 187.407 kb on + strand at 187.407 kb on + strand at 187.408 kb on - strand at 187.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 185,011 - HMPREF1058_RS03795 0.39 -0.1 185,014 - HMPREF1058_RS03795 0.40 -0.6 185,094 + HMPREF1058_RS03795 0.46 +0.2 185,179 + HMPREF1058_RS03795 0.52 -1.8 185,179 + HMPREF1058_RS03795 0.52 +0.7 185,179 + HMPREF1058_RS03795 0.52 -0.9 185,179 + HMPREF1058_RS03795 0.52 +0.0 185,180 - HMPREF1058_RS03795 0.52 -0.4 185,388 - HMPREF1058_RS03795 0.67 +0.3 185,423 + HMPREF1058_RS03795 0.70 +0.7 185,479 + HMPREF1058_RS03795 0.74 +0.7 185,553 + HMPREF1058_RS03795 0.80 +1.7 185,558 - HMPREF1058_RS03795 0.80 -0.2 185,582 - HMPREF1058_RS03795 0.82 +0.0 185,662 + HMPREF1058_RS03795 0.88 -0.5 185,841 + +0.4 185,841 + -0.7 185,854 + +1.3 185,855 - +1.0 185,899 - -0.6 185,911 + -1.1 185,912 - -0.2 185,944 + +0.2 185,945 - HMPREF1058_RS03790 0.10 -0.3 185,948 - HMPREF1058_RS03790 0.10 -0.4 186,025 + HMPREF1058_RS03790 0.21 -1.1 186,068 - HMPREF1058_RS03790 0.27 -1.7 186,161 - HMPREF1058_RS03790 0.40 -1.1 186,181 - HMPREF1058_RS03790 0.43 -0.3 186,276 + HMPREF1058_RS03790 0.56 -0.5 186,304 - HMPREF1058_RS03790 0.60 -0.8 186,312 - HMPREF1058_RS03790 0.61 -0.9 186,320 - HMPREF1058_RS03790 0.62 -0.2 186,410 - HMPREF1058_RS03790 0.75 -1.3 186,432 + HMPREF1058_RS03790 0.78 -2.8 186,433 - HMPREF1058_RS03790 0.78 -0.7 186,465 + HMPREF1058_RS03790 0.82 -1.4 186,487 + HMPREF1058_RS03790 0.85 -0.6 186,487 + HMPREF1058_RS03790 0.85 +0.3 186,534 + +0.3 186,535 - -1.2 186,535 - +0.0 186,536 + -1.2 186,538 + -1.4 186,538 + -1.1 186,538 + +2.0 186,538 + +0.6 186,538 + +0.2 186,538 + +0.4 186,539 - -0.7 186,539 - -1.5 186,539 - -0.7 186,539 - -0.2 186,542 + -2.4 186,542 + +0.2 186,543 - -0.9 186,610 + -0.6 186,611 - +0.5 186,662 + -0.1 186,807 + HMPREF1058_RS03785 0.12 +0.3 186,807 + HMPREF1058_RS03785 0.12 -0.7 186,875 + HMPREF1058_RS03785 0.21 -0.7 186,875 + +1.9 186,876 - HMPREF1058_RS03785 0.21 +0.3 186,900 + HMPREF1058_RS03785 0.25 +0.4 186,969 + HMPREF1058_RS03785 0.34 -0.2 186,992 + HMPREF1058_RS03785 0.37 +0.2 186,992 + HMPREF1058_RS03785 0.37 +1.1 187,203 + HMPREF1058_RS03785 0.67 +0.1 187,203 + HMPREF1058_RS03785 0.67 -0.5 187,207 + HMPREF1058_RS03785 0.67 +0.3 187,208 - HMPREF1058_RS03785 0.67 -1.7 187,223 + HMPREF1058_RS03785 0.69 +0.5 187,224 - HMPREF1058_RS03785 0.70 -1.2 187,336 + HMPREF1058_RS03785 0.85 +0.1 187,337 - HMPREF1058_RS03785 0.85 +1.2 187,345 - HMPREF1058_RS03785 0.86 -0.4 187,362 - HMPREF1058_RS03785 0.89 +0.0 187,362 - HMPREF1058_RS03785 0.89 +0.5 187,366 + HMPREF1058_RS03785 0.89 +0.7 187,407 + +1.0 187,407 + +0.4 187,408 - -0.0 187,502 + -1.7
Or see this region's nucleotide sequence