Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03530
Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | pectate 2.5 mg/ml (C) |
---|---|---|---|---|---|
remove | |||||
256,694 | + | HMPREF1058_RS03535 | 0.89 | +3.0 | |
256,771 | + | -0.8 | |||
256,993 | + | +0.0 | |||
257,184 | + | -0.3 | |||
257,885 | - | HMPREF1058_RS03530 | 0.30 | -0.3 | |
258,946 | + | HMPREF1058_RS03530 | 0.67 | -1.1 | |
259,895 | - | -1.8 | |||
259,899 | - | +0.2 | |||
259,899 | - | +0.8 | |||
259,910 | + | +0.8 | |||
259,911 | - | +0.5 | |||
259,912 | + | -0.2 | |||
259,930 | - | +0.7 | |||
260,810 | - | -0.5 | |||
260,822 | - | +2.0 | |||
260,830 | - | -0.8 | |||
260,830 | - | +0.4 | |||
260,866 | - | +0.7 |
Or see this region's nucleotide sequence