Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03090 and HMPREF1058_RS03085 are separated by 180 nucleotides HMPREF1058_RS03085 and HMPREF1058_RS03080 are separated by 123 nucleotides
HMPREF1058_RS03090: HMPREF1058_RS03090 - trigger factor, at 13,022 to 14,377
_RS03090
HMPREF1058_RS03085: HMPREF1058_RS03085 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 14,558 to 15,229
_RS03085
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.564 kb on + strand, within HMPREF1058_RS03090 at 13.611 kb on - strand, within HMPREF1058_RS03090 at 13.643 kb on - strand, within HMPREF1058_RS03090 at 13.675 kb on + strand, within HMPREF1058_RS03090 at 13.676 kb on - strand, within HMPREF1058_RS03090 at 13.723 kb on - strand, within HMPREF1058_RS03090 at 13.732 kb on - strand, within HMPREF1058_RS03090 at 13.763 kb on - strand, within HMPREF1058_RS03090 at 13.928 kb on - strand at 13.952 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.963 kb on + strand, within HMPREF1058_RS03090 at 13.964 kb on - strand, within HMPREF1058_RS03090 at 14.116 kb on + strand, within HMPREF1058_RS03090 at 14.220 kb on + strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.229 kb on - strand, within HMPREF1058_RS03090 at 14.323 kb on + strand at 14.328 kb on + strand at 14.347 kb on + strand at 14.376 kb on - strand at 14.379 kb on - strand at 14.387 kb on - strand at 14.461 kb on + strand at 14.761 kb on + strand, within HMPREF1058_RS03085 at 14.812 kb on + strand, within HMPREF1058_RS03085 at 14.814 kb on + strand, within HMPREF1058_RS03085 at 14.824 kb on + strand, within HMPREF1058_RS03085 at 15.129 kb on + strand, within HMPREF1058_RS03085 at 15.262 kb on - strand at 15.322 kb on + strand at 15.335 kb on + strand at 15.347 kb on + strand at 15.382 kb on + strand at 15.382 kb on + strand at 15.587 kb on + strand, within HMPREF1058_RS03080 at 15.679 kb on + strand, within HMPREF1058_RS03080 at 15.682 kb on - strand, within HMPREF1058_RS03080 at 15.872 kb on - strand, within HMPREF1058_RS03080 at 15.940 kb on + strand, within HMPREF1058_RS03080 at 15.952 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 16.158 kb on + strand, within HMPREF1058_RS03080 at 16.191 kb on + strand, within HMPREF1058_RS03080 at 16.214 kb on + strand, within HMPREF1058_RS03080 at 16.216 kb on + strand, within HMPREF1058_RS03080 at 16.217 kb on - strand, within HMPREF1058_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 13,564 + HMPREF1058_RS03090 0.40 -0.2 13,564 + HMPREF1058_RS03090 0.40 -0.3 13,611 - HMPREF1058_RS03090 0.43 +0.9 13,643 - HMPREF1058_RS03090 0.46 +0.1 13,675 + HMPREF1058_RS03090 0.48 +0.3 13,676 - HMPREF1058_RS03090 0.48 +1.7 13,723 - HMPREF1058_RS03090 0.52 -0.6 13,732 - HMPREF1058_RS03090 0.52 -1.9 13,763 - HMPREF1058_RS03090 0.55 +0.8 13,928 - -0.6 13,952 + HMPREF1058_RS03090 0.69 +0.2 13,963 + HMPREF1058_RS03090 0.69 +0.2 13,963 + HMPREF1058_RS03090 0.69 +0.6 13,964 - HMPREF1058_RS03090 0.69 +0.7 14,116 + HMPREF1058_RS03090 0.81 -1.3 14,220 + HMPREF1058_RS03090 0.88 +1.7 14,229 - HMPREF1058_RS03090 0.89 +1.2 14,229 - HMPREF1058_RS03090 0.89 +0.7 14,323 + -0.1 14,328 + +0.1 14,347 + -0.1 14,376 - -1.3 14,379 - -1.7 14,387 - +0.2 14,461 + -0.3 14,761 + HMPREF1058_RS03085 0.30 -2.4 14,812 + HMPREF1058_RS03085 0.38 +0.0 14,814 + HMPREF1058_RS03085 0.38 -0.3 14,824 + HMPREF1058_RS03085 0.40 +0.0 15,129 + HMPREF1058_RS03085 0.85 -2.8 15,262 - +1.7 15,322 + +1.0 15,335 + +0.9 15,347 + -0.5 15,382 + -0.8 15,382 + +0.2 15,587 + HMPREF1058_RS03080 0.19 -0.0 15,679 + HMPREF1058_RS03080 0.26 +0.4 15,682 - HMPREF1058_RS03080 0.26 +0.7 15,872 - HMPREF1058_RS03080 0.41 -0.3 15,940 + HMPREF1058_RS03080 0.47 -0.2 15,952 + HMPREF1058_RS03080 0.48 -0.4 15,978 + HMPREF1058_RS03080 0.50 -0.0 15,978 + HMPREF1058_RS03080 0.50 -0.7 15,978 + HMPREF1058_RS03080 0.50 +0.3 16,158 + HMPREF1058_RS03080 0.64 +0.0 16,191 + HMPREF1058_RS03080 0.67 +1.5 16,214 + HMPREF1058_RS03080 0.69 -1.1 16,216 + HMPREF1058_RS03080 0.69 +1.6 16,217 - HMPREF1058_RS03080 0.69 +1.0
Or see this region's nucleotide sequence