Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03015 and HMPREF1058_RS03010 are separated by 123 nucleotides HMPREF1058_RS03010 and HMPREF1058_RS03000 are separated by 251 nucleotides HMPREF1058_RS03000 and HMPREF1058_RS02995 are separated by 12 nucleotides
HMPREF1058_RS03015: HMPREF1058_RS03015 - DUF3874 domain-containing protein, at 31,658 to 33,754
_RS03015
HMPREF1058_RS03010: HMPREF1058_RS03010 - hypothetical protein, at 33,878 to 34,312
_RS03010
HMPREF1058_RS03000: HMPREF1058_RS03000 - IMP dehydrogenase, at 34,564 to 36,039
_RS03000
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 33.783 kb on + strand at 33.784 kb on - strand at 33.784 kb on - strand at 33.831 kb on + strand at 34.040 kb on - strand, within HMPREF1058_RS03010 at 34.188 kb on - strand, within HMPREF1058_RS03010 at 34.340 kb on - strand at 34.373 kb on + strand at 34.423 kb on + strand at 34.526 kb on - strand at 34.540 kb on + strand at 34.564 kb on - strand at 34.572 kb on + strand at 34.572 kb on + strand at 34.573 kb on - strand at 34.573 kb on - strand at 34.616 kb on + strand at 34.617 kb on - strand at 34.617 kb on - strand at 34.823 kb on + strand, within HMPREF1058_RS03000 at 34.858 kb on + strand, within HMPREF1058_RS03000 at 34.960 kb on + strand, within HMPREF1058_RS03000 at 34.961 kb on - strand, within HMPREF1058_RS03000 at 34.968 kb on - strand, within HMPREF1058_RS03000 at 34.971 kb on + strand, within HMPREF1058_RS03000 at 35.020 kb on - strand, within HMPREF1058_RS03000 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.161 kb on - strand, within HMPREF1058_RS03000 at 35.173 kb on - strand, within HMPREF1058_RS03000 at 35.176 kb on - strand, within HMPREF1058_RS03000 at 35.388 kb on + strand, within HMPREF1058_RS03000 at 35.397 kb on - strand, within HMPREF1058_RS03000 at 35.401 kb on - strand, within HMPREF1058_RS03000 at 35.481 kb on + strand, within HMPREF1058_RS03000 at 35.537 kb on - strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.569 kb on - strand, within HMPREF1058_RS03000 at 35.640 kb on + strand, within HMPREF1058_RS03000 at 35.641 kb on - strand, within HMPREF1058_RS03000 at 35.692 kb on - strand, within HMPREF1058_RS03000 at 35.776 kb on + strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.924 kb on + strand at 35.924 kb on + strand at 35.924 kb on + strand at 35.925 kb on - strand at 35.925 kb on - strand at 35.958 kb on + strand at 35.959 kb on - strand at 35.972 kb on + strand at 36.022 kb on + strand at 36.023 kb on - strand at 36.044 kb on + strand at 36.131 kb on + strand at 36.175 kb on + strand at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.239 kb on + strand, within HMPREF1058_RS02995 at 36.245 kb on + strand, within HMPREF1058_RS02995 at 36.261 kb on + strand, within HMPREF1058_RS02995 at 36.270 kb on - strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.439 kb on + strand, within HMPREF1058_RS02995 at 36.503 kb on - strand, within HMPREF1058_RS02995 at 36.684 kb on + strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.787 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 33,783 + +0.6 33,784 - -0.0 33,784 - +0.7 33,831 + +0.1 34,040 - HMPREF1058_RS03010 0.37 +0.4 34,188 - HMPREF1058_RS03010 0.71 -0.3 34,340 - -0.9 34,373 + +0.0 34,423 + -0.2 34,526 - -2.2 34,540 + -0.7 34,564 - -1.1 34,572 + -1.5 34,572 + -0.7 34,573 - -2.3 34,573 - -4.3 34,616 + -2.3 34,617 - -1.0 34,617 - -0.3 34,823 + HMPREF1058_RS03000 0.18 -2.9 34,858 + HMPREF1058_RS03000 0.20 -0.6 34,960 + HMPREF1058_RS03000 0.27 -2.9 34,961 - HMPREF1058_RS03000 0.27 -1.8 34,968 - HMPREF1058_RS03000 0.27 +0.0 34,971 + HMPREF1058_RS03000 0.28 -3.6 35,020 - HMPREF1058_RS03000 0.31 -1.7 35,160 + HMPREF1058_RS03000 0.40 -2.2 35,160 + HMPREF1058_RS03000 0.40 -0.3 35,161 - HMPREF1058_RS03000 0.40 -2.1 35,173 - HMPREF1058_RS03000 0.41 -0.3 35,176 - HMPREF1058_RS03000 0.41 +0.0 35,388 + HMPREF1058_RS03000 0.56 -2.5 35,397 - HMPREF1058_RS03000 0.56 -3.1 35,401 - HMPREF1058_RS03000 0.57 -1.7 35,481 + HMPREF1058_RS03000 0.62 -2.0 35,537 - HMPREF1058_RS03000 0.66 -0.9 35,568 + HMPREF1058_RS03000 0.68 -2.4 35,568 + HMPREF1058_RS03000 0.68 -1.2 35,569 - HMPREF1058_RS03000 0.68 -1.3 35,640 + HMPREF1058_RS03000 0.73 -2.4 35,641 - HMPREF1058_RS03000 0.73 -2.0 35,692 - HMPREF1058_RS03000 0.76 -2.1 35,776 + HMPREF1058_RS03000 0.82 -1.9 35,838 - HMPREF1058_RS03000 0.86 -0.7 35,838 - HMPREF1058_RS03000 0.86 -2.0 35,924 + -3.7 35,924 + -1.8 35,924 + -0.8 35,925 - -1.2 35,925 - -0.7 35,958 + -4.1 35,959 - -1.5 35,972 + -0.8 36,022 + -1.0 36,023 - -0.4 36,044 + -0.1 36,131 + +0.5 36,175 + -0.3 36,234 + HMPREF1058_RS02995 0.14 -0.2 36,234 + HMPREF1058_RS02995 0.14 +0.9 36,239 + HMPREF1058_RS02995 0.14 +0.6 36,245 + HMPREF1058_RS02995 0.14 +0.6 36,261 + HMPREF1058_RS02995 0.16 +1.3 36,270 - HMPREF1058_RS02995 0.16 -0.5 36,273 + HMPREF1058_RS02995 0.17 +0.5 36,273 + HMPREF1058_RS02995 0.17 +0.4 36,274 - HMPREF1058_RS02995 0.17 -0.1 36,274 - HMPREF1058_RS02995 0.17 -0.2 36,439 + HMPREF1058_RS02995 0.29 +0.0 36,503 - HMPREF1058_RS02995 0.34 -0.4 36,684 + HMPREF1058_RS02995 0.47 +0.9 36,697 - HMPREF1058_RS02995 0.48 +1.0 36,697 - HMPREF1058_RS02995 0.48 -0.3 36,697 - HMPREF1058_RS02995 0.48 +0.7 36,786 + HMPREF1058_RS02995 0.55 +1.1 36,786 + HMPREF1058_RS02995 0.55 +0.6 36,787 - HMPREF1058_RS02995 0.55 +0.5 36,953 - HMPREF1058_RS02995 0.67 -0.9 36,953 - HMPREF1058_RS02995 0.67 +0.0
Or see this region's nucleotide sequence